STRINGSTRING
Slbp Slbp Rbm22 Rbm22 Rnpc3 Rnpc3 Rbm7-2 Rbm7-2 LOC101835567 LOC101835567 Tra2b Tra2b Celf1 Celf1 Hnrnpu Hnrnpu Ddx5 Ddx5 Hnrnpl Hnrnpl Ptbp1 Ptbp1 U2af2 U2af2 ENSMAUP00000006105 ENSMAUP00000006105 Tex16 Tex16 Eri1 Eri1 Hnrnpa2b1 Hnrnpa2b1 ENSMAUP00000004100 ENSMAUP00000004100 Ep300 Ep300 ENSMAUP00000003314 ENSMAUP00000003314 Srsf2 Srsf2 Elavl4 Elavl4 Sox9 Sox9 U2af1 U2af1 ENSMAUP00000022912 ENSMAUP00000022912 Hnrnpa1 Hnrnpa1 ENSMAUP00000021312 ENSMAUP00000021312 ENSMAUP00000019942 ENSMAUP00000019942 Tardbp Tardbp Rbm7 Rbm7 U2af1l4 U2af1l4 Lsm1 Lsm1 Slu7 Slu7 Celf4 Celf4 Rbm41 Rbm41 Hnrnpk Hnrnpk ENSMAUP00000015601 ENSMAUP00000015601 Prpf8 Prpf8 Sf1 Sf1 ENSMAUP00000013721 ENSMAUP00000013721 ENSMAUP00000012407 ENSMAUP00000012407 Rbm20 Rbm20 Per2 Per2 Rbm24 Rbm24 ENSMAUP00000010327 ENSMAUP00000010327 Celf2 Celf2 Zrsr2 Zrsr2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SlbpHistone RNA hairpin-binding protein isoform X1. (275 aa)
Rbm22pre-mRNA-splicing factor RBM22. (420 aa)
Rnpc3RNA-binding protein 40. (514 aa)
Rbm7-2RNA-binding protein 7. (265 aa)
LOC101835567U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (105 aa)
Tra2bTransformer-2 protein homolog beta. (182 aa)
Celf1CUGBP Elav-like family member 1 isoform X6. (513 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U. (813 aa)
Ddx5Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (615 aa)
HnrnplHeterogeneous nuclear ribonucleoprotein L isoform X2. (586 aa)
Ptbp1Polypyrimidine tract-binding protein 1. (545 aa)
U2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
ENSMAUP00000006105annotation not available (189 aa)
Tex16Dentin sialophosphoprotein-like. (1133 aa)
Eri13'-5' exoribonuclease 1. (347 aa)
Hnrnpa2b1Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1. (353 aa)
ENSMAUP00000004100annotation not available (198 aa)
Ep300Histone acetyltransferase p300 isoform X3. (2417 aa)
ENSMAUP00000003314annotation not available (266 aa)
Srsf2Serine/arginine-rich splicing factor 2. (221 aa)
Elavl4ELAV-like protein; Belongs to the RRM elav family. (385 aa)
Sox9Transcription factor SOX-9. (507 aa)
U2af1Splicing factor U2AF 35 kDa subunit isoform X1. (239 aa)
ENSMAUP00000022912annotation not available (508 aa)
Hnrnpa1Heterogeneous nuclear ribonucleoprotein A1 isoform X2. (320 aa)
ENSMAUP00000021312annotation not available (135 aa)
ENSMAUP00000019942annotation not available (190 aa)
TardbpTAR DNA-binding protein 43 isoform X1. (414 aa)
Rbm7RNA binding motif protein 7. (155 aa)
U2af1l4Splicing factor U2AF 26 kDa subunit. (220 aa)
Lsm1U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (111 aa)
Slu7pre-mRNA-splicing factor SLU7. (586 aa)
Celf4CUGBP Elav-like family member 4. (114 aa)
Rbm41RNA-binding protein 41 isoform X2. (437 aa)
HnrnpkHeterogeneous nuclear ribonucleoprotein K. (484 aa)
ENSMAUP00000015601annotation not available (310 aa)
Prpf8pre-mRNA-processing-splicing factor 8. (322 aa)
Sf1Splicing factor 1 isoform X9. (638 aa)
ENSMAUP00000013721annotation not available (98 aa)
ENSMAUP00000012407annotation not available (102 aa)
Rbm20RNA-binding protein 20. (1144 aa)
Per2Period circadian protein homolog 2. (785 aa)
Rbm24RNA-binding protein 24 isoform X1. (236 aa)
ENSMAUP00000010327annotation not available (476 aa)
Celf2CUGBP Elav-like family member 2 isoform X2. (451 aa)
Zrsr2U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (508 aa)
Your Current Organism:
Mesocricetus auratus
NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster
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