46 items (Mesocricetus auratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Slbp	Histone RNA hairpin-binding protein isoform X1. (275 aa)
	Rbm22	pre-mRNA-splicing factor RBM22. (420 aa)
	Rnpc3	RNA-binding protein 40. (514 aa)
	Rbm7-2	RNA-binding protein 7. (265 aa)
	LOC101835567	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...] (105 aa)
	Tra2b	Transformer-2 protein homolog beta. (182 aa)
	Celf1	CUGBP Elav-like family member 1 isoform X6. (513 aa)
	Hnrnpu	Heterogeneous nuclear ribonucleoprotein U. (813 aa)
	Ddx5	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (615 aa)
	Hnrnpl	Heterogeneous nuclear ribonucleoprotein L isoform X2. (586 aa)
	Ptbp1	Polypyrimidine tract-binding protein 1. (545 aa)
	U2af2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (468 aa)
	ENSMAUP00000006105	annotation not available (189 aa)
	Tex16	Dentin sialophosphoprotein-like. (1133 aa)
	Eri1	3'-5' exoribonuclease 1. (347 aa)
	Hnrnpa2b1	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1. (353 aa)
	ENSMAUP00000004100	annotation not available (198 aa)
	Ep300	Histone acetyltransferase p300 isoform X3. (2417 aa)
	ENSMAUP00000003314	annotation not available (266 aa)
	Srsf2	Serine/arginine-rich splicing factor 2. (221 aa)
	Elavl4	ELAV-like protein; Belongs to the RRM elav family. (385 aa)
	Sox9	Transcription factor SOX-9. (507 aa)
	U2af1	Splicing factor U2AF 35 kDa subunit isoform X1. (239 aa)
	ENSMAUP00000022912	annotation not available (508 aa)
	Hnrnpa1	Heterogeneous nuclear ribonucleoprotein A1 isoform X2. (320 aa)
	ENSMAUP00000021312	annotation not available (135 aa)
	ENSMAUP00000019942	annotation not available (190 aa)
	Tardbp	TAR DNA-binding protein 43 isoform X1. (414 aa)
	Rbm7	RNA binding motif protein 7. (155 aa)
	U2af1l4	Splicing factor U2AF 26 kDa subunit. (220 aa)
	Lsm1	U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation. (111 aa)
	Slu7	pre-mRNA-splicing factor SLU7. (586 aa)
	Celf4	CUGBP Elav-like family member 4. (114 aa)
	Rbm41	RNA-binding protein 41 isoform X2. (437 aa)
	Hnrnpk	Heterogeneous nuclear ribonucleoprotein K. (484 aa)
	ENSMAUP00000015601	annotation not available (310 aa)
	Prpf8	pre-mRNA-processing-splicing factor 8. (322 aa)
	Sf1	Splicing factor 1 isoform X9. (638 aa)
	ENSMAUP00000013721	annotation not available (98 aa)
	ENSMAUP00000012407	annotation not available (102 aa)
	Rbm20	RNA-binding protein 20. (1144 aa)
	Per2	Period circadian protein homolog 2. (785 aa)
	Rbm24	RNA-binding protein 24 isoform X1. (236 aa)
	ENSMAUP00000010327	annotation not available (476 aa)
	Celf2	CUGBP Elav-like family member 2 isoform X2. (451 aa)
	Zrsr2	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2. (508 aa)

Your Current Organism:

Mesocricetus auratus

NCBI taxonomy Id: 10036
Other names: Golden hamsters, M. auratus, Syrian golden hamster, Syrian golden hamsters, Syrian hamster, Syrian hamsters, golden hamster

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Celf1	ENSMAUP00000004100	ENSMAUP00000007919	ENSMAUP00000004100	CUGBP Elav-like family member 1 isoform X6.	annotation not available	0.407
Celf1	ENSMAUP00000010327	ENSMAUP00000007919	ENSMAUP00000010327	CUGBP Elav-like family member 1 isoform X6.	annotation not available	0.479
Celf1	ENSMAUP00000015601	ENSMAUP00000007919	ENSMAUP00000015601	CUGBP Elav-like family member 1 isoform X6.	annotation not available	0.527
Celf1	ENSMAUP00000022912	ENSMAUP00000007919	ENSMAUP00000022912	CUGBP Elav-like family member 1 isoform X6.	annotation not available	0.479
Celf1	Hnrnpa2b1	ENSMAUP00000007919	ENSMAUP00000004504	CUGBP Elav-like family member 1 isoform X6.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1.	0.528
Celf1	Hnrnpk	ENSMAUP00000007919	ENSMAUP00000016000	CUGBP Elav-like family member 1 isoform X6.	Heterogeneous nuclear ribonucleoprotein K.	0.423
Celf1	Ptbp1	ENSMAUP00000007919	ENSMAUP00000006455	CUGBP Elav-like family member 1 isoform X6.	Polypyrimidine tract-binding protein 1.	0.479
Celf1	Tardbp	ENSMAUP00000007919	ENSMAUP00000019901	CUGBP Elav-like family member 1 isoform X6.	TAR DNA-binding protein 43 isoform X1.	0.597
Celf1	Tra2b	ENSMAUP00000007919	ENSMAUP00000002859	CUGBP Elav-like family member 1 isoform X6.	Transformer-2 protein homolog beta.	0.407
Celf2	ENSMAUP00000015601	ENSMAUP00000008366	ENSMAUP00000015601	CUGBP Elav-like family member 2 isoform X2.	annotation not available	0.415
Celf2	Hnrnpa1	ENSMAUP00000008366	ENSMAUP00000021452	CUGBP Elav-like family member 2 isoform X2.	Heterogeneous nuclear ribonucleoprotein A1 isoform X2.	0.414
Celf2	Tardbp	ENSMAUP00000008366	ENSMAUP00000019901	CUGBP Elav-like family member 2 isoform X2.	TAR DNA-binding protein 43 isoform X1.	0.441
Ddx5	ENSMAUP00000003314	ENSMAUP00000006871	ENSMAUP00000003314	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	annotation not available	0.587
Ddx5	ENSMAUP00000004100	ENSMAUP00000006871	ENSMAUP00000004100	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	annotation not available	0.431
Ddx5	ENSMAUP00000015601	ENSMAUP00000006871	ENSMAUP00000015601	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	annotation not available	0.662
Ddx5	ENSMAUP00000021312	ENSMAUP00000006871	ENSMAUP00000021312	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	annotation not available	0.536
Ddx5	Ep300	ENSMAUP00000006871	ENSMAUP00000003797	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Histone acetyltransferase p300 isoform X3.	0.744
Ddx5	Hnrnpa1	ENSMAUP00000006871	ENSMAUP00000021452	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein A1 isoform X2.	0.587
Ddx5	Hnrnpa2b1	ENSMAUP00000006871	ENSMAUP00000004504	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1.	0.722
Ddx5	Hnrnpk	ENSMAUP00000006871	ENSMAUP00000016000	Probable ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family.	Heterogeneous nuclear ribonucleoprotein K.	0.754

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