Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFW12255.1 | SFW74035.1 | SAMN05661012_00058 | SAMN05661012_04090 | Hypothetical protein. | DNA polymerase III, epsilon subunit. | 0.632 |
| SFW13270.1 | SFW22586.1 | SAMN05661012_00145 | SAMN05661012_00582 | UvrD/REP helicase N-terminal domain-containing protein. | DNA polymerase-3 subunit epsilon. | 0.788 |
| SFW13270.1 | SFW40854.1 | SAMN05661012_00145 | SAMN05661012_01645 | UvrD/REP helicase N-terminal domain-containing protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.829 |
| SFW13270.1 | SFW56172.1 | SAMN05661012_00145 | SAMN05661012_02544 | UvrD/REP helicase N-terminal domain-containing protein. | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. | 0.562 |
| SFW13270.1 | SFW71345.1 | SAMN05661012_00145 | SAMN05661012_03756 | UvrD/REP helicase N-terminal domain-containing protein. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.686 |
| SFW13270.1 | SFW74035.1 | SAMN05661012_00145 | SAMN05661012_04090 | UvrD/REP helicase N-terminal domain-containing protein. | DNA polymerase III, epsilon subunit. | 0.462 |
| SFW13270.1 | ligA | SAMN05661012_00145 | SAMN05661012_03900 | UvrD/REP helicase N-terminal domain-containing protein. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.580 |
| SFW13270.1 | mutL | SAMN05661012_00145 | SAMN05661012_06186 | UvrD/REP helicase N-terminal domain-containing protein. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.562 |
| SFW17953.1 | SFW22586.1 | SAMN05661012_00433 | SAMN05661012_00582 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | DNA polymerase-3 subunit epsilon. | 0.418 |
| SFW17953.1 | SFW40981.1 | SAMN05661012_00433 | SAMN05661012_01661 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | DNA mismatch repair protein MutS. | 0.731 |
| SFW17953.1 | SFW45426.1 | SAMN05661012_00433 | SAMN05661012_01831 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | Exonuclease RecJ. | 0.463 |
| SFW17953.1 | SFW46401.1 | SAMN05661012_00433 | SAMN05661012_01919 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | MutS domain III. | 0.874 |
| SFW17953.1 | SFW72260.1 | SAMN05661012_00433 | SAMN05661012_03903 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | MutS domain V; Belongs to the DNA mismatch repair MutS family. | 0.600 |
| SFW17953.1 | SFW84999.1 | SAMN05661012_00433 | SAMN05661012_05651 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | Hypothetical protein. | 0.637 |
| SFW17953.1 | mutL | SAMN05661012_00433 | SAMN05661012_06186 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.683 |
| SFW17953.1 | mutS | SAMN05661012_00433 | SAMN05661012_02269 | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.890 |
| SFW22586.1 | SFW13270.1 | SAMN05661012_00582 | SAMN05661012_00145 | DNA polymerase-3 subunit epsilon. | UvrD/REP helicase N-terminal domain-containing protein. | 0.788 |
| SFW22586.1 | SFW17953.1 | SAMN05661012_00582 | SAMN05661012_00433 | DNA polymerase-3 subunit epsilon. | DNA mismatch repair protein MutS2; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. | 0.418 |
| SFW22586.1 | SFW24756.1 | SAMN05661012_00582 | SAMN05661012_00737 | DNA polymerase-3 subunit epsilon. | Hypothetical protein. | 0.451 |
| SFW22586.1 | SFW26432.1 | SAMN05661012_00582 | SAMN05661012_00870 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, alpha subunit. | 0.955 |
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