STRINGSTRING
CFU_0183 CFU_0183 CFU_0973 CFU_0973 copR copR uhpA uhpA rcsB rcsB CFU_4367 CFU_4367 CFU_2841 CFU_2841 CFU_2932 CFU_2932 vsrD vsrD bvgA bvgA CFU_3763 CFU_3763 phoB2 phoB2 CFU_3910 CFU_3910 creB creB CFU_4289 CFU_4289 hrpG hrpG gltR gltR ompR ompR CFU_1957 CFU_1957 phoB phoB CFU_1187 CFU_1187 CFU_1194 CFU_1194 CFU_1534 CFU_1534 tdiS tdiS CFU_1628 CFU_1628 CFU_0152 CFU_0152 qseB qseB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CFU_0183DNA-binding heavy metal response regulator. (226 aa)
CFU_0973Two Component Transcriptional Regulator, LuxR family. (217 aa)
copRTwo component Transcriptional regulator, winged helix family. (228 aa)
uhpADNA-binding response regulator, LuxR family, near polyamine transporter. (210 aa)
rcsBDNA-binding response regulator. (232 aa)
CFU_4367Two component transcriptional regulator, LuxR family. (215 aa)
CFU_2841Putative transcriptional regulator, LuxR family. (257 aa)
CFU_2932Two component transcriptional regulator, LuxR family. (329 aa)
vsrDResponse regulator protein VsrD (LuxRfamily). (210 aa)
bvgADNA-binding response regulator, LuxR family. (208 aa)
CFU_3763Two-component system response regulator (Pho family). (250 aa)
phoB2Phosphate regulon transcriptional regulatory protein. (229 aa)
CFU_3910Putative Two-component system response regulator with CheY-like receiver domain. (229 aa)
creBTwo component transcriptional regulator, winged helix family. (243 aa)
CFU_4289Two component transcriptional regulator, LuxR family. (212 aa)
hrpGHrpG. (257 aa)
gltRTwo component transcriptional regulator, winged helix family. (236 aa)
ompRTwo-component system response regulator. (251 aa)
CFU_1957LuxR-type transcriptional regulator. (236 aa)
phoBPhosphate regulon transcriptional regulatory protein. (234 aa)
CFU_1187Two-component response regulator. (330 aa)
CFU_1194Putative response regulator transcription regulator protein. (238 aa)
CFU_1534Two-component system, OmpR family, response regulator; Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein. (222 aa)
tdiSPutative transcription regulator protein. (191 aa)
CFU_1628Two component transcriptional regulator, winged helix family. (180 aa)
CFU_0152Transcriptional regulator, LuxR family. (245 aa)
qseBTwo-component system response regulator. (225 aa)
Your Current Organism:
Collimonas fungivorans
NCBI taxonomy Id: 1005048
Other names: C. fungivorans Ter331, Collimonas fungivorans Ter331, Collimonas fungivorans str. Ter331, Collimonas fungivorans strain Ter331, beta proteobacterium Ter331
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