STRINGSTRING
CFU_2189 CFU_2189 potA3 potA3 CFU_4411 CFU_4411 CFU_4410 CFU_4410 atpD atpD potA2 potA2 hrcN hrcN yjjK yjjK CFU_4207 CFU_4207 comM comM phnC phnC rbsA2 rbsA2 CFU_4071 CFU_4071 livF2 livF2 gspE gspE hslU hslU CFU_3998 CFU_3998 CFU_3997 CFU_3997 CFU_3985 CFU_3985 gltL gltL nasD nasD CFU_3929 CFU_3929 recN recN recA recA CFU_3770 CFU_3770 metN metN CFU_3594 CFU_3594 CFU_3550 CFU_3550 ntrC ntrC prpR prpR CFU_3486 CFU_3486 cvaB cvaB abcZ abcZ clpA clpA CFU_3182 CFU_3182 xylG xylG macB macB proV2 proV2 lolD lolD ssuB2 ssuB2 cysA cysA CFU_2954 CFU_2954 gldA gldA CFU_2941 CFU_2941 livG2 livG2 urtE2 urtE2 urtE urtE dnaX dnaX CFU_2809 CFU_2809 yadG yadG ftsK2 ftsK2 CFU_2714 CFU_2714 CFU_2697 CFU_2697 dppD dppD dppF dppF rocR rocR cyaB cyaB ssuB ssuB CFU_2608 CFU_2608 CFU_2565 CFU_2565 CFU_2561 CFU_2561 CFU_2557 CFU_2557 CFU_2532 CFU_2532 pstB pstB ftsH ftsH dnaB dnaB CFU_2471 CFU_2471 lon lon CFU_2434 CFU_2434 radA radA CFU_2395 CFU_2395 CFU_2394 CFU_2394 ytfR ytfR clpB2 clpB2 fecE fecE CFU_2297 CFU_2297 dctD dctD ybhF ybhF yehX yehX rbsA-2 rbsA-2 CFU_2054 CFU_2054 wzc wzc tauB tauB CFU_1939 CFU_1939 rbsA rbsA engA engA ycfV ycfV hlyB hlyB CFU_1808 CFU_1808 CFU_1807 CFU_1807 CFU_1783 CFU_1783 acoR acoR modC modC CFU_1558 CFU_1558 abc abc CFU_1517 CFU_1517 proV proV CFU_1440 CFU_1440 CFU_1432 CFU_1432 hrpA hrpA CFU_1399 CFU_1399 ybiT ybiT CFU_1326 CFU_1326 gguA gguA yheS yheS livF livF livG livG ugpC ugpC wzt wzt CFU_1098 CFU_1098 CFU_1054 CFU_1054 msbA msbA ftsK ftsK fliI fliI rho rho CFU_0863 CFU_0863 pilT pilT ruvB ruvB potA potA CFU_0634 CFU_0634 yliA yliA ftsE ftsE CFU_0510 CFU_0510 CFU_0504 CFU_0504 CFU_0463 CFU_0463 CFU_0322 CFU_0322 malK malK CFU_0221 CFU_0221 clpB clpB dnaA dnaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CFU_2189ABC-type sugar transport system, ATP-binding protein. (564 aa)
potA3Spermidine Putrescine transport ATP-binding protein potA. (363 aa)
CFU_4411Putative ABC transporter. (277 aa)
CFU_4410Putative ABC transporter. (253 aa)
atpDATP synthase beta chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. (466 aa)
potA2Spermidine Putrescine transport ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (393 aa)
hrcNHrcN. (440 aa)
yjjKATPase components of ABC transporters with duplicated ATPase domains. (558 aa)
CFU_4207Putative ATP-binding component of ABC transporter precursor. (260 aa)
comMMG(2+) chelatase family protein. (506 aa)
phnCPhosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (297 aa)
rbsA2Ribose ABC transport system, ATP-binding protein RbsA. (533 aa)
CFU_4071ABC-type branched-chain amino acid transport systems, ATPase component; Belongs to the binding-protein-dependent transport system permease family. (601 aa)
livF2Branched-chain amino acid transport ATP-binding protein livF. (252 aa)
gspEGeneral secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (483 aa)
hslUATP-dependent hsl protease ATP-binding subunit hslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (547 aa)
CFU_3998Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily. (327 aa)
CFU_3997Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily. (346 aa)
CFU_3985ABC transporter ATP-binding cassette. (626 aa)
gltLGlutamate/aspartate transport ATP-binding protein gltL. (241 aa)
nasDNitrate ABC transporter, ATP-binding protein. (270 aa)
CFU_3929Putative ATP/GTP-binding protein. (305 aa)
recNDNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (560 aa)
recARecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (369 aa)
CFU_3770ABC transporter; Belongs to the ABC transporter superfamily. (365 aa)
metNMethionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (349 aa)
CFU_3594ABC transporter related protein. (740 aa)
CFU_3550Putative ABC-transport protein, ATP-binding component. (257 aa)
ntrCNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (463 aa)
prpRPropionate catabolism operon regulatory protein PrpR. (549 aa)
CFU_3486ATP-binding ABC transporter protein. (275 aa)
cvaBToxin secretion ABC transporter, ATP-binding protein, putative. (730 aa)
abcZTransport protein (ABC superfamily, atp_bind). (659 aa)
clpAATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family. (772 aa)
CFU_3182Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (575 aa)
xylGD-xylose transport ATP-binding protein xylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (528 aa)
macBMacrolide export ATP-binding/permease protein macB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides. (659 aa)
proV2L-proline Glycine Betaine ABC transport ATP-binding protein proV. (396 aa)
lolDLipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (236 aa)
ssuB2Sulfonate ABC transporter, ATP-binding subunit; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (278 aa)
cysASulfate and thiosulfate import ATP-binding protein cysA; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (364 aa)
CFU_2954ABC transporter related protein. (515 aa)
gldAABC transporter related protein. (352 aa)
CFU_2941Putative amino-acid ATP-binding ABC transporter protein. (249 aa)
livG2LivG. (253 aa)
urtE2Urea ABC transporter, ATPase protein UrtE. (229 aa)
urtEUrea ABC transporter, ATPase protein. (232 aa)
dnaXDNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (703 aa)
CFU_2809ABC transporter related protein. (269 aa)
yadGABC-type multidrug transport system, ATPase component. (308 aa)
ftsK2Cell division protein ftsK. (782 aa)
CFU_2714AAA ATPase, central domain protein. (435 aa)
CFU_2697ABC transporter ATP-binding protein. (256 aa)
dppDDipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily. (349 aa)
dppFDipeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily. (334 aa)
rocRArginine utilization regulatory protein r. (472 aa)
cyaBHlyB/MsbA family ABC transporter. (720 aa)
ssuBABC-type putative sulfate transporter, ATPase component. (280 aa)
CFU_2608N-Acetyl-D-glucosamine ABC transport system, ATP-binding component; Belongs to the ABC transporter superfamily. (373 aa)
CFU_2565Putative secretion pathway ATPase. (617 aa)
CFU_2561ABC transporter related protein. (296 aa)
CFU_2557Putative ABC transporter. (331 aa)
CFU_2532Conserved hypothetical protein. (284 aa)
pstBPhosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (262 aa)
ftsHCell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (628 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (466 aa)
CFU_2471ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (261 aa)
lonATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (803 aa)
CFU_2434Putative transport protein (ABC superfamily, atp_bind). (245 aa)
radADNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (456 aa)
CFU_2395Putative ABC transporter. (257 aa)
CFU_2394Putative amino-acid ATP-binding ABC transporter protein. (230 aa)
ytfRPutative ABC transporter. (518 aa)
clpB2ClpB protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (867 aa)
fecEABC cobalamin/Fe3+-siderophores transporter, ATPase subunit. (330 aa)
CFU_2297ABC-type siderophore export system, fused ATPase and permease components. (584 aa)
dctDNitrogen regulation protein NR(I). (456 aa)
ybhFABC-type multidrug transport system, ATPase component. (329 aa)
yehXPutative ABC transporter. (310 aa)
rbsA-2Putative fucose ABC transporter, ATP-binding component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (524 aa)
CFU_2054ATPase, AAA family. (744 aa)
wzcTyrosine-protein kinase. (746 aa)
tauBTaurine transport ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (271 aa)
CFU_1939Putative ABC transporter. (260 aa)
rbsARibose ABC transport system, ATP-binding protein RbsA. (495 aa)
engAGTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (447 aa)
ycfVMethionine ABC transporter ATP-binding protein. (232 aa)
hlyBPutative ABC transporter. (746 aa)
CFU_1808Putative ABC transporter. (262 aa)
CFU_1807Putative ABC transporter; Belongs to the binding-protein-dependent transport system permease family. (663 aa)
CFU_1783Hypothetical protein. (862 aa)
acoRSigma54 specific transcriptional regulator with GAF sensor, Fis family. (657 aa)
modCMolybdenum transport ATP-binding protein. (225 aa)
CFU_1558ABC transporter, ATP-binding protein. (264 aa)
abcMethionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (346 aa)
CFU_1517Putative ABC transporter, transmembrane region. (598 aa)
proVL-proline Glycine Betaine ABC transport ATP-binding protein. (372 aa)
CFU_1440Maltose ABC transporter, ATP-binding protein, putative. (381 aa)
CFU_1432Putative transport protein (ABC superfamily, ATP_bind). (623 aa)
hrpAHelicase. (1365 aa)
CFU_1399ABC-type polar amino acid transport system, ATPase component. (242 aa)
ybiTPutative transport protein (ABC superfamily, atp_bind). (533 aa)
CFU_1326ABC transporter, transmembrane region. (770 aa)
gguASugar ABC transporter. (512 aa)
yheSPutative transport protein (ABC superfamily, atp_bind). (663 aa)
livFBranched-chain amino acid transport ATP-binding protein. (240 aa)
livGHigh-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind). (256 aa)
ugpCSN-glycerol-3-phosphate transport ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (370 aa)
wztABC subunit of A-band LPS efflux transporter. (419 aa)
CFU_1098Various polyols ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily. (380 aa)
CFU_1054Conserved hypothetical protein with a nucleoside triphosphate hydrolase domain. (500 aa)
msbALipid A export ATP-binding/permease protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (585 aa)
ftsKCell division protein. (896 aa)
fliIFlagellum-specific ATP synthase. (481 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (420 aa)
CFU_0863Sigma54 Specific Transcriptional regulator, Fis family. (465 aa)
pilTTwitching motility protein. (347 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (352 aa)
potASpermidine Putrescine transport ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (361 aa)
CFU_0634Putative ABC transporter; Belongs to the ABC transporter superfamily. (377 aa)
yliAOligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; Belongs to the ABC transporter superfamily. (630 aa)
ftsECell division transporter, ATP-binding protein. (234 aa)
CFU_0510ABC-type multidrug transport system, ATPase component. (317 aa)
CFU_0504ABC transport system ATP-binding protein. (278 aa)
CFU_0463Putative transport protein (ABC superfamily, atp_bind). (257 aa)
CFU_0322ABC peptide/opine/nickel family transporter, ATPase subunit; Belongs to the ABC transporter superfamily. (640 aa)
malKMaltose/maltodextrin transport ATP-binding protein; Belongs to the ABC transporter superfamily. (379 aa)
CFU_0221Putative ABC transporter. (558 aa)
clpBClpB protein; Belongs to the ClpA/ClpB family. (899 aa)
dnaAChromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (476 aa)
Your Current Organism:
Collimonas fungivorans
NCBI taxonomy Id: 1005048
Other names: C. fungivorans Ter331, Collimonas fungivorans Ter331, Collimonas fungivorans str. Ter331, Collimonas fungivorans strain Ter331, beta proteobacterium Ter331
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