(5 nodes) Ribosome network (Buttiauxella agrestis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	rpsB	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family. (241 aa)
	rpsP	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family. (82 aa)
	rpsO	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
	rpsI	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family. (130 aa)
	rplM	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)

Your Current Organism:

Buttiauxella agrestis

NCBI taxonomy Id: 1006004
Other names: B. agrestis ATCC 33320, Buttiauxella agrestis ATCC 33320, Buttiauxella agrestis CDC 11786-81, Buttiauxella agrestis CIP 80.31, Buttiauxella agrestis CUETM 77-167, Buttiauxella agrestis DSM 4586, Buttiauxella agrestis str. ATCC 33320, Buttiauxella agrestis strain ATCC 33320

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rpsB	GBAG_3702	GBAG_0660	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	0.993
rplM	rpsI	GBAG_3702	GBAG_3701	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsO	GBAG_3702	GBAG_3642	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.993
rplM	rpsP	GBAG_3702	GBAG_3147	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	0.988
rpsB	rplM	GBAG_0660	GBAG_3702	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.993
rpsB	rpsI	GBAG_0660	GBAG_3701	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsB	rpsO	GBAG_0660	GBAG_3642	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rpsB	rpsP	GBAG_0660	GBAG_3147	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rpsI	rplM	GBAG_3701	GBAG_3702	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rpsI	rpsB	GBAG_3701	GBAG_0660	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	0.998
rpsI	rpsO	GBAG_3701	GBAG_3642	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rpsI	rpsP	GBAG_3701	GBAG_3147	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpsO	rplM	GBAG_3642	GBAG_3702	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.993
rpsO	rpsB	GBAG_3642	GBAG_0660	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	0.997
rpsO	rpsI	GBAG_3642	GBAG_3701	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsO	rpsP	GBAG_3642	GBAG_3147	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpsP	rplM	GBAG_3147	GBAG_3702	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	LSU ribosomal protein L13p (L13Ae); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.988
rpsP	rpsB	GBAG_3147	GBAG_0660	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	SSU ribosomal protein S2p; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family.	0.998
rpsP	rpsI	GBAG_3147	GBAG_3701	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	SSU ribosomal protein S9p (S16e); Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.	0.997
rpsP	rpsO	GBAG_3147	GBAG_3642	SSU ribosomal protein S16p; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bS16 family.	SSU ribosomal protein S15p (S13e); Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997

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