(10 nodes) ABC-type amino acid transporter activity network (Pusillimonas sp. T77)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PT7_2779	Glutamate/aspartate transport ATP-binding protein. (244 aa)
	PT7_2383	L-amino acid ABC transporter, ATP-binding protein. (246 aa)
	PT7_2595	Amino-acid ABC transporter ATP-binding protein y4tH. (257 aa)
	PT7_1802	ABC transporter protein. (244 aa)
	PT7_2312	Polar amino acid ABC transporter, inner membrane subunit. (507 aa)
	PT7_1539	Amino-acid ABC transporter ATP-binding protein y4tH. (279 aa)
	PT7_0389	L-amino acid ABC transporter, ATP-binding protein. (264 aa)
	PT7_0036	Glutamine ABC transporter ATP-binding protein. (242 aa)
	metN	Amino-acid ABC transporter ATP-binding protein y4tH; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (320 aa)
	PT7_3349	ABC transporter protein. (241 aa)

Your Current Organism:

Pusillimonas sp. T77

NCBI taxonomy Id: 1007105
Other names: P. sp. T7-7, Pusillimonas sp. T7-7

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
PT7_0036	PT7_2312	Glutamine ABC transporter ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.492
PT7_0389	PT7_2312	L-amino acid ABC transporter, ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.506
PT7_1539	PT7_2312	Amino-acid ABC transporter ATP-binding protein y4tH.	Polar amino acid ABC transporter, inner membrane subunit.	0.521
PT7_1802	PT7_2312	ABC transporter protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.510
PT7_1802	PT7_2779	ABC transporter protein.	Glutamate/aspartate transport ATP-binding protein.	0.901
PT7_1802	PT7_3349	ABC transporter protein.	ABC transporter protein.	0.901
PT7_2312	PT7_0036	Polar amino acid ABC transporter, inner membrane subunit.	Glutamine ABC transporter ATP-binding protein.	0.492
PT7_2312	PT7_0389	Polar amino acid ABC transporter, inner membrane subunit.	L-amino acid ABC transporter, ATP-binding protein.	0.506
PT7_2312	PT7_1539	Polar amino acid ABC transporter, inner membrane subunit.	Amino-acid ABC transporter ATP-binding protein y4tH.	0.521
PT7_2312	PT7_1802	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter protein.	0.510
PT7_2312	PT7_2383	Polar amino acid ABC transporter, inner membrane subunit.	L-amino acid ABC transporter, ATP-binding protein.	0.503
PT7_2312	PT7_2779	Polar amino acid ABC transporter, inner membrane subunit.	Glutamate/aspartate transport ATP-binding protein.	0.506
PT7_2312	PT7_3349	Polar amino acid ABC transporter, inner membrane subunit.	ABC transporter protein.	0.504
PT7_2383	PT7_2312	L-amino acid ABC transporter, ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.503
PT7_2779	PT7_1802	Glutamate/aspartate transport ATP-binding protein.	ABC transporter protein.	0.901
PT7_2779	PT7_2312	Glutamate/aspartate transport ATP-binding protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.506
PT7_2779	PT7_3349	Glutamate/aspartate transport ATP-binding protein.	ABC transporter protein.	0.902
PT7_3349	PT7_1802	ABC transporter protein.	ABC transporter protein.	0.901
PT7_3349	PT7_2312	ABC transporter protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.504
PT7_3349	PT7_2779	ABC transporter protein.	Glutamate/aspartate transport ATP-binding protein.	0.902