(12 nodes) Mixed, incl. Protein import into peroxisome matrix, docking, and Pex, N-terminal network (Verticillium longisporum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BN1708_000260	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (459 aa)
	BN1708_002131	Pex2_Pex12 domain-containing protein. (444 aa)
	BN1708_009809	AB hydrolase-1 domain-containing protein. (343 aa)
	BN1708_009971	SH3 domain-containing protein. (436 aa)
	BN1708_017430	Uncharacterized protein. (202 aa)
	BN1708_017519	TPR_REGION domain-containing protein. (245 aa)
	BN1708_012166	Uncharacterized protein. (235 aa)
	BN1708_003355	Uncharacterized protein. (1019 aa)
	BN1708_003447	SH3 domain-containing protein. (437 aa)
	BN1708_004457	AB hydrolase-1 domain-containing protein. (343 aa)
	BN1708_007632	RING-type domain-containing protein. (384 aa)
	BN1708_016644	Uncharacterized protein. (158 aa)

Your Current Organism:

Verticillium longisporum

NCBI taxonomy Id: 100787
Other names: CBS 124.64, CBS H-19247, MUCL 9802, NRRL 54793, PD687, V. longisporum, Verticillium dahliae var. longisporum, Verticillium longisporum (C. Stark) Karapapa et al.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BN1708_000260	BN1708_002131	A0A0G4KFZ8	A0A0G4KHR9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Pex2_Pex12 domain-containing protein.	0.999
BN1708_000260	BN1708_003355	A0A0G4KFZ8	A0A0G4LGG2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.999
BN1708_000260	BN1708_003447	A0A0G4KFZ8	A0A0G4LHB0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SH3 domain-containing protein.	0.999
BN1708_000260	BN1708_004457	A0A0G4KFZ8	A0A0G4M0K6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	AB hydrolase-1 domain-containing protein.	0.893
BN1708_000260	BN1708_007632	A0A0G4KFZ8	A0A0G4MUV4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	RING-type domain-containing protein.	0.999
BN1708_000260	BN1708_009809	A0A0G4KFZ8	A0A0G4KKN6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	AB hydrolase-1 domain-containing protein.	0.893
BN1708_000260	BN1708_009971	A0A0G4KFZ8	A0A0G4KMH4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	SH3 domain-containing protein.	0.999
BN1708_000260	BN1708_012166	A0A0G4KFZ8	A0A0G4L7E6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.909
BN1708_000260	BN1708_016644	A0A0G4KFZ8	A0A0G4MW23	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.977
BN1708_000260	BN1708_017430	A0A0G4KFZ8	A0A0G4L1D8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.990
BN1708_000260	BN1708_017519	A0A0G4KFZ8	A0A0G4L555	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	TPR_REGION domain-containing protein.	0.999
BN1708_002131	BN1708_000260	A0A0G4KHR9	A0A0G4KFZ8	Pex2_Pex12 domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.999
BN1708_002131	BN1708_003355	A0A0G4KHR9	A0A0G4LGG2	Pex2_Pex12 domain-containing protein.	Uncharacterized protein.	0.999
BN1708_002131	BN1708_003447	A0A0G4KHR9	A0A0G4LHB0	Pex2_Pex12 domain-containing protein.	SH3 domain-containing protein.	0.995
BN1708_002131	BN1708_004457	A0A0G4KHR9	A0A0G4M0K6	Pex2_Pex12 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.999
BN1708_002131	BN1708_007632	A0A0G4KHR9	A0A0G4MUV4	Pex2_Pex12 domain-containing protein.	RING-type domain-containing protein.	0.998
BN1708_002131	BN1708_009809	A0A0G4KHR9	A0A0G4KKN6	Pex2_Pex12 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.999
BN1708_002131	BN1708_009971	A0A0G4KHR9	A0A0G4KMH4	Pex2_Pex12 domain-containing protein.	SH3 domain-containing protein.	0.995
BN1708_002131	BN1708_012166	A0A0G4KHR9	A0A0G4L7E6	Pex2_Pex12 domain-containing protein.	Uncharacterized protein.	0.999
BN1708_002131	BN1708_016644	A0A0G4KHR9	A0A0G4MW23	Pex2_Pex12 domain-containing protein.	Uncharacterized protein.	0.921

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