(62 nodes) Mixed, incl. Leukocyte cell-cell adhesion, and SERine Proteinase INhibitors network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Serpinb5	Serpin B5 isoform X1. (375 aa)
	MGP_CAROLIEiJ_P0019390	annotation not available (346 aa)
	Serpinb7	Serpin B7 isoform X1. (380 aa)
	Ptprc	Receptor-type tyrosine-protein phosphatase C. (1302 aa)
	Sele	Selectin, endothelial cell. (619 aa)
	Sell	L-selectin isoform X1. (387 aa)
	Selp	Selectin, platelet. (768 aa)
	Cd34	Hematopoietic progenitor cell antigen CD34 isoform X1. (382 aa)
	Cr2	Complement receptor type 2. (1409 aa)
	Cd24a	Signal transducer CD24. (76 aa)
	Itgb2	Integrin beta 2. (770 aa)
	Itgae	Integrin alpha-E isoform X1. (1167 aa)
	Icam2	Intercellular adhesion molecule 2 isoform X1. (277 aa)
	Cd7	T-cell surface glycoprotein CD7. (210 aa)
	Pxdn	Peroxidasin homolog. (1475 aa)
	Serpinb1a	Leukocyte elastase inhibitor. (379 aa)
	MGP_CAROLIEiJ_P0034040	LOW QUALITY PROTEIN: leukocyte elastase inhibitor C-like. (352 aa)
	Serpinb6b	Serpin B6-like isoform X1. (377 aa)
	Serpinb9	Serpin B9-like. (374 aa)
	MGP_CAROLIEiJ_P0034048	annotation not available (377 aa)
	MGP_CAROLIEiJ_P0034049	annotation not available (377 aa)
	MGP_CAROLIEiJ_P0034050	annotation not available (426 aa)
	Serpinb6c	Serpin B6-like isoform X1. (379 aa)
	Serpinb6a	Serpin B6. (399 aa)
	MGP_CAROLIEiJ_P0038502	Lymphocyte antigen 6 complex locus protein D/E/F/G6/H. (110 aa)
	Mb	Myoglobin. (154 aa)
	Glycam1	Glycosylation-dependent cell adhesion molecule 1 isoform X1. (151 aa)
	Jam2	Junctional adhesion molecule B isoform X1. (298 aa)
	Itgb2l	Integrin beta-2-like protein. (795 aa)
	Adgre1	Adhesion G protein-coupled receptor E1 isoform X1. (929 aa)
	Cd5	T-cell surface glycoprotein CD5. (494 aa)
	Dntt	DNA nucleotidylexotransferase isoform X1. (530 aa)
	Ly75	Lymphocyte antigen 75 isoform X1. (1723 aa)
	Cd44	CD44 antigen isoform X1. (778 aa)
	Siglec1	LOW QUALITY PROTEIN: sialoadhesin. (1701 aa)
	Cd93	Complement component C1q receptor. (644 aa)
	Zbtb46	Zinc finger and BTB domain-containing protein 46 isoform X1. (600 aa)
	Anxa5	Annexin A5. (319 aa)
	Vcam1	Vascular cell adhesion molecule 1. (739 aa)
	Spp1	Secreted phosphoprotein 1. (296 aa)
	Selplg	P-selectin glycoprotein ligand 1. (398 aa)
	Hyal6	Hyaluronoglucosaminidase. (494 aa)
	Cd207	C-type lectin domain family 4 member K. (331 aa)
	Clec4a4	C-type lectin domain family 4, member a4. (237 aa)
	MGP_CAROLIEiJ_P0076293	annotation not available (118 aa)
	Clec9a	C-type lectin domain family 9, member a. (288 aa)
	Cd22	B-cell receptor CD22 isoform X1. (867 aa)
	Siglecf	Sialic acid-binding Ig-like lectin 5 isoform X1. (569 aa)
	Siglecg	Sialic acid binding Ig-like lectin G. (597 aa)
	Spn	Leukosialin. (386 aa)
	Itgal	Integrin alpha-L isoform X1. (1161 aa)
	Itgam	Integrin subunit alpha M. (1166 aa)
	Itgam-2	Integrin alpha-M isoform X1. (1129 aa)
	Itgax	Integrin alpha X. (1169 aa)
	MGP_CAROLIEiJ_P0082615	annotation not available (107 aa)
	Tspan32	Tetraspanin-32 isoform X1. (255 aa)
	Fcer2a	Low affinity immunoglobulin epsilon Fc receptor isoform X1. (331 aa)
	Glg1	Golgi apparatus protein 1. (1172 aa)
	Icam1	Intercellular adhesion molecule 1. (536 aa)
	Jam3	Junctional adhesion molecule 3. (310 aa)
	Thy1	Thy-1 membrane glycoprotein. (162 aa)
	Itga9	Integrin alpha 9. (1036 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adgre1	Anxa5	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0057360	Adhesion G protein-coupled receptor E1 isoform X1.	Annexin A5.	0.572
Adgre1	Cd207	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0074618	Adhesion G protein-coupled receptor E1 isoform X1.	C-type lectin domain family 4 member K.	0.460
Adgre1	Cd24a	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0022809	Adhesion G protein-coupled receptor E1 isoform X1.	Signal transducer CD24.	0.418
Adgre1	Cd34	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0022072	Adhesion G protein-coupled receptor E1 isoform X1.	Hematopoietic progenitor cell antigen CD34 isoform X1.	0.518
Adgre1	Cd44	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0053363	Adhesion G protein-coupled receptor E1 isoform X1.	CD44 antigen isoform X1.	0.677
Adgre1	Cd5	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0048146	Adhesion G protein-coupled receptor E1 isoform X1.	T-cell surface glycoprotein CD5.	0.502
Adgre1	Cr2	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0022096	Adhesion G protein-coupled receptor E1 isoform X1.	Complement receptor type 2.	0.466
Adgre1	Hyal6	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0072826	Adhesion G protein-coupled receptor E1 isoform X1.	Hyaluronoglucosaminidase.	0.499
Adgre1	Icam1	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0086918	Adhesion G protein-coupled receptor E1 isoform X1.	Intercellular adhesion molecule 1.	0.518
Adgre1	Itgae	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0028095	Adhesion G protein-coupled receptor E1 isoform X1.	Integrin alpha-E isoform X1.	0.609
Adgre1	Itgam	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0082602	Adhesion G protein-coupled receptor E1 isoform X1.	Integrin subunit alpha M.	0.757
Adgre1	Itgam-2	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0082603	Adhesion G protein-coupled receptor E1 isoform X1.	Integrin alpha-M isoform X1.	0.692
Adgre1	Itgax	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0082608	Adhesion G protein-coupled receptor E1 isoform X1.	Integrin alpha X.	0.742
Adgre1	Ly75	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0051909	Adhesion G protein-coupled receptor E1 isoform X1.	Lymphocyte antigen 75 isoform X1.	0.503
Adgre1	MGP_CAROLIEiJ_P0034040	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0034040	Adhesion G protein-coupled receptor E1 isoform X1.	LOW QUALITY PROTEIN: leukocyte elastase inhibitor C-like.	0.418
Adgre1	MGP_CAROLIEiJ_P0034050	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0034050	Adhesion G protein-coupled receptor E1 isoform X1.	annotation not available	0.508
Adgre1	MGP_CAROLIEiJ_P0038502	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0038502	Adhesion G protein-coupled receptor E1 isoform X1.	Lymphocyte antigen 6 complex locus protein D/E/F/G6/H.	0.737
Adgre1	MGP_CAROLIEiJ_P0076293	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0076293	Adhesion G protein-coupled receptor E1 isoform X1.	annotation not available	0.638
Adgre1	Ptprc	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0020154	Adhesion G protein-coupled receptor E1 isoform X1.	Receptor-type tyrosine-protein phosphatase C.	0.765
Adgre1	Pxdn	MGP_CAROLIEiJ_P0045428	MGP_CAROLIEiJ_P0032042	Adhesion G protein-coupled receptor E1 isoform X1.	Peroxidasin homolog.	0.587