(21 nodes) Mixed, incl. Innate vocalization behavior, and White fat cell differentiation network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Twist2	Twist-related protein 2. (160 aa)
	Prrx1	Paired mesoderm homeobox protein 1 isoform X1. (245 aa)
	Twist1	Twist-related protein 1. (206 aa)
	Zfp366	Zinc finger protein 366. (746 aa)
	Snai2	Zinc finger protein SNAI2. (269 aa)
	Foxp4	Forkhead box protein P4 isoform X1. (685 aa)
	Zeb1	Zinc finger E-box-binding homeobox 1. (1114 aa)
	Impact	Protein IMPACT. (319 aa)
	Tbx10	T-box transcription factor TBX10 isoform X1. (385 aa)
	Zeb2	Zinc finger E-box-binding homeobox 2. (1259 aa)
	Mecom	MDS1 and EVI1 complex locus protein EVI1 isoform X1. (1115 aa)
	Fhl3	Four and a half LIM domains protein 3. (280 aa)
	Ctbp1	C-terminal-binding protein 1 isoform X1. (441 aa)
	Klf3	Krueppel-like factor 3. (344 aa)
	Foxp2	Forkhead box protein P2 isoform X1. (739 aa)
	Foxp1	Forkhead box protein P1. (715 aa)
	Ctbp2	C-terminal-binding protein 2 isoform X1. (988 aa)
	Foxc2	Forkhead box protein C2. (494 aa)
	Snai3	Zinc finger protein SNAI3. (287 aa)
	Srpx2	Sushi repeat-containing protein SRPX2. (468 aa)
	Klf8	Krueppel-like factor 8/12. (355 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ctbp1	Ctbp2	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0082832	C-terminal-binding protein 1 isoform X1.	C-terminal-binding protein 2 isoform X1.	0.992
Ctbp1	Fhl3	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0064295	C-terminal-binding protein 1 isoform X1.	Four and a half LIM domains protein 3.	0.417
Ctbp1	Foxp1	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0075176	C-terminal-binding protein 1 isoform X1.	Forkhead box protein P1.	0.467
Ctbp1	Foxp2	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0072649	C-terminal-binding protein 1 isoform X1.	Forkhead box protein P2 isoform X1.	0.693
Ctbp1	Impact	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0046098	C-terminal-binding protein 1 isoform X1.	Protein IMPACT.	0.522
Ctbp1	Klf3	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0068267	C-terminal-binding protein 1 isoform X1.	Krueppel-like factor 3.	0.782
Ctbp1	Klf8	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0093124	C-terminal-binding protein 1 isoform X1.	Krueppel-like factor 8/12.	0.749
Ctbp1	Mecom	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0057147	C-terminal-binding protein 1 isoform X1.	MDS1 and EVI1 complex locus protein EVI1 isoform X1.	0.955
Ctbp1	Snai2	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0040496	C-terminal-binding protein 1 isoform X1.	Zinc finger protein SNAI2.	0.691
Ctbp1	Zeb1	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0045951	C-terminal-binding protein 1 isoform X1.	Zinc finger E-box-binding homeobox 1.	0.916
Ctbp1	Zeb2	MGP_CAROLIEiJ_P0067515	MGP_CAROLIEiJ_P0051651	C-terminal-binding protein 1 isoform X1.	Zinc finger E-box-binding homeobox 2.	0.782
Ctbp2	Ctbp1	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0067515	C-terminal-binding protein 2 isoform X1.	C-terminal-binding protein 1 isoform X1.	0.992
Ctbp2	Impact	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0046098	C-terminal-binding protein 2 isoform X1.	Protein IMPACT.	0.522
Ctbp2	Klf3	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0068267	C-terminal-binding protein 2 isoform X1.	Krueppel-like factor 3.	0.794
Ctbp2	Klf8	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0093124	C-terminal-binding protein 2 isoform X1.	Krueppel-like factor 8/12.	0.745
Ctbp2	Mecom	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0057147	C-terminal-binding protein 2 isoform X1.	MDS1 and EVI1 complex locus protein EVI1 isoform X1.	0.937
Ctbp2	Zeb1	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0045951	C-terminal-binding protein 2 isoform X1.	Zinc finger E-box-binding homeobox 1.	0.861
Ctbp2	Zeb2	MGP_CAROLIEiJ_P0082832	MGP_CAROLIEiJ_P0051651	C-terminal-binding protein 2 isoform X1.	Zinc finger E-box-binding homeobox 2.	0.656
Fhl3	Ctbp1	MGP_CAROLIEiJ_P0064295	MGP_CAROLIEiJ_P0067515	Four and a half LIM domains protein 3.	C-terminal-binding protein 1 isoform X1.	0.417
Fhl3	Klf3	MGP_CAROLIEiJ_P0064295	MGP_CAROLIEiJ_P0068267	Four and a half LIM domains protein 3.	Krueppel-like factor 3.	0.647