(10 nodes) Organellar small ribosomal subunit network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Mrps9	28S ribosomal protein S9, mitochondrial isoform X1. (396 aa)
	Mrps14	28S ribosomal protein S14, mitochondrial. (128 aa)
	Mrps27	28S ribosomal protein S27, mitochondrial isoform X1. (415 aa)
	Mrps16	28S ribosomal protein S16, mitochondrial. (135 aa)
	Mrps6	28S ribosomal protein S6, mitochondrial. (125 aa)
	Mrps10	28S ribosomal protein S10, mitochondrial isoform X1. (201 aa)
	Mrps5	28S ribosomal protein S5, mitochondrial. (432 aa)
	Dap3	28S ribosomal protein S29, mitochondrial. (396 aa)
	Mrps25	28S ribosomal protein S25, mitochondrial. (171 aa)
	Mrps35	28S ribosomal protein S35, mitochondrial isoform X1. (320 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dap3	Mrps10	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0045068	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S10, mitochondrial isoform X1.	0.996
Dap3	Mrps14	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0020660	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S14, mitochondrial.	0.993
Dap3	Mrps16	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0035722	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S16, mitochondrial.	0.996
Dap3	Mrps25	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0075082	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S25, mitochondrial.	0.990
Dap3	Mrps27	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0035258	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S27, mitochondrial isoform X1.	0.997
Dap3	Mrps35	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0076904	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S35, mitochondrial isoform X1.	0.994
Dap3	Mrps5	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0054464	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S5, mitochondrial.	0.998
Dap3	Mrps6	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0042358	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S6, mitochondrial.	0.992
Dap3	Mrps9	MGP_CAROLIEiJ_P0058517	MGP_CAROLIEiJ_P0017376	28S ribosomal protein S29, mitochondrial.	28S ribosomal protein S9, mitochondrial isoform X1.	0.996
Mrps10	Dap3	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0058517	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S29, mitochondrial.	0.996
Mrps10	Mrps14	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0020660	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S14, mitochondrial.	0.997
Mrps10	Mrps16	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0035722	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S16, mitochondrial.	0.999
Mrps10	Mrps25	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0075082	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S25, mitochondrial.	0.994
Mrps10	Mrps27	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0035258	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S27, mitochondrial isoform X1.	0.985
Mrps10	Mrps35	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0076904	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S35, mitochondrial isoform X1.	0.996
Mrps10	Mrps5	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0054464	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S5, mitochondrial.	0.998
Mrps10	Mrps6	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0042358	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S6, mitochondrial.	0.999
Mrps10	Mrps9	MGP_CAROLIEiJ_P0045068	MGP_CAROLIEiJ_P0017376	28S ribosomal protein S10, mitochondrial isoform X1.	28S ribosomal protein S9, mitochondrial isoform X1.	0.999
Mrps14	Dap3	MGP_CAROLIEiJ_P0020660	MGP_CAROLIEiJ_P0058517	28S ribosomal protein S14, mitochondrial.	28S ribosomal protein S29, mitochondrial.	0.993
Mrps14	Mrps10	MGP_CAROLIEiJ_P0020660	MGP_CAROLIEiJ_P0045068	28S ribosomal protein S14, mitochondrial.	28S ribosomal protein S10, mitochondrial isoform X1.	0.997