(15 nodes) Lipoprotein transport network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Msr1	Macrophage scavenger receptor types I and II isoform X1. (458 aa)
	Apoc3	Apolipoprotein C-III isoform X1. (137 aa)
	Zdhhc17	Palmitoyltransferase ZDHHC13/17. (632 aa)
	Sar1b	GTP-binding protein SAR1b. (198 aa)
	Unc119	Unc-119 lipid binding chaperone. (266 aa)
	Vmp1	Vacuole membrane protein 1. (406 aa)
	Apob	Apolipoprotein B-100. (4505 aa)
	Mia2	Melanoma inhibitory activity protein 2 isoform X1. (807 aa)
	Cubn	Cubilin. (3623 aa)
	Surf4	ER-derived vesicles protein. (269 aa)
	Mttp	Microsomal triglyceride transfer protein large subunit. (909 aa)
	Cd36	Platelet glycoprotein 4. (472 aa)
	Unc119b	Protein unc-119 homolog B. (251 aa)
	Pparg	Peroxisome proliferator-activated receptor gamma isoform X1. (505 aa)
	Lsr	Lipolysis-stimulated lipoprotein receptor isoform X1. (593 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Apob	Apoc3	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0087689	Apolipoprotein B-100.	Apolipoprotein C-III isoform X1.	0.979
Apob	Cd36	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0066748	Apolipoprotein B-100.	Platelet glycoprotein 4.	0.905
Apob	Lsr	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0078837	Apolipoprotein B-100.	Lipolysis-stimulated lipoprotein receptor isoform X1.	0.690
Apob	Msr1	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0084217	Apolipoprotein B-100.	Macrophage scavenger receptor types I and II isoform X1.	0.403
Apob	Mttp	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0060721	Apolipoprotein B-100.	Microsomal triglyceride transfer protein large subunit.	0.988
Apob	Pparg	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0075565	Apolipoprotein B-100.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.564
Apob	Sar1b	MGP_CAROLIEiJ_P0031866	MGP_CAROLIEiJ_P0026551	Apolipoprotein B-100.	GTP-binding protein SAR1b.	0.619
Apoc3	Apob	MGP_CAROLIEiJ_P0087689	MGP_CAROLIEiJ_P0031866	Apolipoprotein C-III isoform X1.	Apolipoprotein B-100.	0.979
Apoc3	Mttp	MGP_CAROLIEiJ_P0087689	MGP_CAROLIEiJ_P0060721	Apolipoprotein C-III isoform X1.	Microsomal triglyceride transfer protein large subunit.	0.668
Apoc3	Pparg	MGP_CAROLIEiJ_P0087689	MGP_CAROLIEiJ_P0075565	Apolipoprotein C-III isoform X1.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.405
Cd36	Apob	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0031866	Platelet glycoprotein 4.	Apolipoprotein B-100.	0.905
Cd36	Msr1	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0084217	Platelet glycoprotein 4.	Macrophage scavenger receptor types I and II isoform X1.	0.709
Cd36	Mttp	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0060721	Platelet glycoprotein 4.	Microsomal triglyceride transfer protein large subunit.	0.508
Cd36	Pparg	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0075565	Platelet glycoprotein 4.	Peroxisome proliferator-activated receptor gamma isoform X1.	0.753
Lsr	Apob	MGP_CAROLIEiJ_P0078837	MGP_CAROLIEiJ_P0031866	Lipolysis-stimulated lipoprotein receptor isoform X1.	Apolipoprotein B-100.	0.690
Mia2	Sar1b	MGP_CAROLIEiJ_P0032353	MGP_CAROLIEiJ_P0026551	Melanoma inhibitory activity protein 2 isoform X1.	GTP-binding protein SAR1b.	0.482
Msr1	Apob	MGP_CAROLIEiJ_P0084217	MGP_CAROLIEiJ_P0031866	Macrophage scavenger receptor types I and II isoform X1.	Apolipoprotein B-100.	0.403
Msr1	Cd36	MGP_CAROLIEiJ_P0084217	MGP_CAROLIEiJ_P0066748	Macrophage scavenger receptor types I and II isoform X1.	Platelet glycoprotein 4.	0.709
Mttp	Apob	MGP_CAROLIEiJ_P0060721	MGP_CAROLIEiJ_P0031866	Microsomal triglyceride transfer protein large subunit.	Apolipoprotein B-100.	0.988
Mttp	Apoc3	MGP_CAROLIEiJ_P0060721	MGP_CAROLIEiJ_P0087689	Microsomal triglyceride transfer protein large subunit.	Apolipoprotein C-III isoform X1.	0.668