(4 nodes) Phosphocreatine biosynthetic process network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ckm	Creatine kinase M-type. (381 aa)
	Ckmt2	Creatine kinase S-type, mitochondrial. (419 aa)
	Ckmt1	Creatine kinase, mitochondrial 1, ubiquitous. (376 aa)
	Ckb	Creatine kinase B-type. (381 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ckb	Ckm	MGP_CAROLIEiJ_P0033415	MGP_CAROLIEiJ_P0077770	Creatine kinase B-type.	Creatine kinase M-type.	0.999
Ckb	Ckmt2	MGP_CAROLIEiJ_P0033415	MGP_CAROLIEiJ_P0035080	Creatine kinase B-type.	Creatine kinase S-type, mitochondrial.	0.922
Ckm	Ckb	MGP_CAROLIEiJ_P0077770	MGP_CAROLIEiJ_P0033415	Creatine kinase M-type.	Creatine kinase B-type.	0.999
Ckm	Ckmt2	MGP_CAROLIEiJ_P0077770	MGP_CAROLIEiJ_P0035080	Creatine kinase M-type.	Creatine kinase S-type, mitochondrial.	0.984
Ckmt1	Ckmt2	MGP_CAROLIEiJ_P0054146	MGP_CAROLIEiJ_P0035080	Creatine kinase, mitochondrial 1, ubiquitous.	Creatine kinase S-type, mitochondrial.	0.997
Ckmt2	Ckb	MGP_CAROLIEiJ_P0035080	MGP_CAROLIEiJ_P0033415	Creatine kinase S-type, mitochondrial.	Creatine kinase B-type.	0.922
Ckmt2	Ckm	MGP_CAROLIEiJ_P0035080	MGP_CAROLIEiJ_P0077770	Creatine kinase S-type, mitochondrial.	Creatine kinase M-type.	0.984
Ckmt2	Ckmt1	MGP_CAROLIEiJ_P0035080	MGP_CAROLIEiJ_P0054146	Creatine kinase S-type, mitochondrial.	Creatine kinase, mitochondrial 1, ubiquitous.	0.997