STRINGSTRING
Stra6 Stra6 Th Th Aldh1a3 Aldh1a3 Lrp6 Lrp6 Ift122 Ift122 Hipk2 Hipk2 Kdm2b Kdm2b MGP_CAROLIEiJ_P0067375 MGP_CAROLIEiJ_P0067375 Arid1a Arid1a Phactr4 Phactr4 Hipk1 Hipk1 Bmp7 Bmp7 Pax6 Pax6 Sp3 Sp3 Pax2 Pax2 Aldh1a1 Aldh1a1 Zeb1 Zeb1 Six3 Six3 Cryaa Cryaa Sp1 Sp1 Tfap2a Tfap2a Foxf2 Foxf2 Twist1 Twist1 Sox11 Sox11 Tbx2 Tbx2 Frs2 Frs2 Cited2 Cited2 Prox1 Prox1 Ihh Ihh Fzd5 Fzd5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Stra6Vitamin A receptor/transporter (stra6) family protein. (629 aa)
ThTyrosine 3-monooxygenase isoform X1. (498 aa)
Aldh1a3Aldehyde dehydrogenase family 1 member A3 isoform X1. (512 aa)
Lrp6Low-density lipoprotein receptor-related protein 6 isoform X1. (1613 aa)
Ift122Intraflagellar transport protein 122 homolog isoform X1. (1241 aa)
Hipk2Homeodomain-interacting protein kinase 2. (1127 aa)
Kdm2bF-box and leucine-rich repeat protein 10/11. (1308 aa)
MGP_CAROLIEiJ_P0067375Intraflagellar transport protein 172 homolog. (207 aa)
Arid1aAT-rich interactive domain-containing protein 1A. (2288 aa)
Phactr4Phosphatase and actin regulator 4. (681 aa)
Hipk1Homeodomain-interacting protein kinase 1. (1210 aa)
Bmp7Bone morphogenetic protein 7. (430 aa)
Pax6Paired box protein Pax-6 isoform X1. (436 aa)
Sp3Transcription factor Sp3. (784 aa)
Pax2Paired box 2. (416 aa)
Aldh1a1Retinal dehydrogenase 1. (501 aa)
Zeb1Zinc finger E-box-binding homeobox 1. (1114 aa)
Six3Homeobox protein SIX3/6. (347 aa)
CryaaAlpha-crystallin A chain isoform X1. (196 aa)
Sp1Transcription factor Sp1. (397 aa)
Tfap2aTranscription factor AP-2-alpha isoform X1. (440 aa)
Foxf2Forkhead box protein F2. (446 aa)
Twist1Twist-related protein 1. (206 aa)
Sox11Transcription factor SOX11/12 (SOX group C). (395 aa)
Tbx2T-box transcription factor TBX2. (711 aa)
Frs2Fibroblast growth factor receptor substrate 2. (508 aa)
Cited2Cbp/p300-interacting transactivator 2. (269 aa)
Prox1Prospero homeobox protein 1 isoform X1. (737 aa)
IhhIndian hedgehog protein. (449 aa)
Fzd5Frizzled 5/8. (585 aa)
Your Current Organism:
Mus caroli
NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse
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