(39 nodes) phosphatidylinositol-4-phosphate binding network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Arfip2	Arfaptin-2. (341 aa)
	Plekhf1	Pleckstrin homology domain-containing family F member 1. (279 aa)
	Plekha5	Pleckstrin homology domain containing A5. (1274 aa)
	Washc2	WASH complex subunit FAM21. (1334 aa)
	Lancl3	LanC-like protein 3. (420 aa)
	Lancl2	LanC-like protein 2 isoform X1. (450 aa)
	Plekha8	Pleckstrin homology domain-containing family A member 8 isoform X1. (519 aa)
	Golph3l	Golgi phosphoprotein 3-like. (343 aa)
	Arfip1	Arfaptin-1 isoform X1. (373 aa)
	Gm37240	Predicted gene, 37240. (252 aa)
	Jph2	Junctophilin-2. (696 aa)
	Snx5	Sorting nexin-5/6/32. (404 aa)
	Pla2g4e	Cytosolic phospholipase A2 epsilon. (874 aa)
	Plekha3	Pleckstrin homology domain-containing family A member 3. (299 aa)
	Dab2ip	Disabled homolog 2-interacting protein isoform X1. (1191 aa)
	Sh3pxd2a	SH3 and PX domain-containing protein 2A. (1123 aa)
	Osbp	Oxysterol-binding protein 1 isoform X1. (805 aa)
	Snx24	Sorting nexin-22/24. (169 aa)
	Gsdmd	Gasdermin-D. (486 aa)
	Gsdmc-2	Gasdermin-C isoform X1. (474 aa)
	MGP_CAROLIEiJ_P0038313	annotation not available (410 aa)
	MGP_CAROLIEiJ_P0038311	annotation not available (413 aa)
	Gsdmc	Gasdermin C. (472 aa)
	Golph3	Golgi phosphoprotein 3. (168 aa)
	Rubcnl	Protein RUBCNL-like. (674 aa)
	Mbl1	Mannose-binding protein A. (236 aa)
	MGP_CAROLIEiJ_P0029675	annotation not available (385 aa)
	MGP_CAROLIEiJ_P0029672	annotation not available (412 aa)
	Col4a3bp	Collagen type IV alpha-3-binding protein isoform X1. (624 aa)
	Obsl1	Obscurin-like protein 1 isoform X1. (1804 aa)
	Pla2g4a	Cytosolic phospholipase A2 isoform X1. (748 aa)
	Rs1	Retinoschisin. (224 aa)
	Snx3	Sorting nexin-3/12. (162 aa)
	Osbpl8	Oxysterol-binding protein-related protein 8. (889 aa)
	Sh3pxd2b	SH3 and PX domain-containing protein 2B. (910 aa)
	Sap30l	Histone deacetylase complex subunit SAP30L. (182 aa)
	Obscn	LOW QUALITY PROTEIN: obscurin. (7153 aa)
	MGP_CAROLIEiJ_P0029679	annotation not available (257 aa)
	Osbpl5	Oxysterol-binding protein-related protein 5. (898 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Arfip1	Arfip2	MGP_CAROLIEiJ_P0058191	MGP_CAROLIEiJ_P0081327	Arfaptin-1 isoform X1.	Arfaptin-2.	0.401
Arfip2	Arfip1	MGP_CAROLIEiJ_P0081327	MGP_CAROLIEiJ_P0058191	Arfaptin-2.	Arfaptin-1 isoform X1.	0.401
Osbp	Plekha8	MGP_CAROLIEiJ_P0048254	MGP_CAROLIEiJ_P0073936	Oxysterol-binding protein 1 isoform X1.	Pleckstrin homology domain-containing family A member 8 isoform X1.	0.589
Osbpl5	Osbpl8	MGP_CAROLIEiJ_P0083495	MGP_CAROLIEiJ_P0024730	Oxysterol-binding protein-related protein 5.	Oxysterol-binding protein-related protein 8.	0.424
Osbpl8	Osbpl5	MGP_CAROLIEiJ_P0024730	MGP_CAROLIEiJ_P0083495	Oxysterol-binding protein-related protein 8.	Oxysterol-binding protein-related protein 5.	0.424
Plekha3	Plekha5	MGP_CAROLIEiJ_P0052429	MGP_CAROLIEiJ_P0076650	Pleckstrin homology domain-containing family A member 3.	Pleckstrin homology domain containing A5.	0.503
Plekha5	Plekha3	MGP_CAROLIEiJ_P0076650	MGP_CAROLIEiJ_P0052429	Pleckstrin homology domain containing A5.	Pleckstrin homology domain-containing family A member 3.	0.503
Plekha8	Osbp	MGP_CAROLIEiJ_P0073936	MGP_CAROLIEiJ_P0048254	Pleckstrin homology domain-containing family A member 8 isoform X1.	Oxysterol-binding protein 1 isoform X1.	0.589
Snx3	Snx5	MGP_CAROLIEiJ_P0022772	MGP_CAROLIEiJ_P0054953	Sorting nexin-3/12.	Sorting nexin-5/6/32.	0.880
Snx3	Washc2	MGP_CAROLIEiJ_P0022772	MGP_CAROLIEiJ_P0075644	Sorting nexin-3/12.	WASH complex subunit FAM21.	0.499
Snx5	Snx3	MGP_CAROLIEiJ_P0054953	MGP_CAROLIEiJ_P0022772	Sorting nexin-5/6/32.	Sorting nexin-3/12.	0.880
Snx5	Washc2	MGP_CAROLIEiJ_P0054953	MGP_CAROLIEiJ_P0075644	Sorting nexin-5/6/32.	WASH complex subunit FAM21.	0.457
Washc2	Snx3	MGP_CAROLIEiJ_P0075644	MGP_CAROLIEiJ_P0022772	WASH complex subunit FAM21.	Sorting nexin-3/12.	0.499
Washc2	Snx5	MGP_CAROLIEiJ_P0075644	MGP_CAROLIEiJ_P0054953	WASH complex subunit FAM21.	Sorting nexin-5/6/32.	0.457