(4 nodes) Oleic acid binding network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fabp1	Fatty acid-binding protein 1, liver. (127 aa)
	Cd36	Platelet glycoprotein 4. (472 aa)
	Fabp3	Fatty acid-binding protein 3, muscle and heart. (133 aa)
	Scp2	Non-specific lipid-transfer protein. (547 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cd36	Fabp1	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0074212	Platelet glycoprotein 4.	Fatty acid-binding protein 1, liver.	0.758
Cd36	Fabp3	MGP_CAROLIEiJ_P0066748	MGP_CAROLIEiJ_P0064738	Platelet glycoprotein 4.	Fatty acid-binding protein 3, muscle and heart.	0.580
Fabp1	Cd36	MGP_CAROLIEiJ_P0074212	MGP_CAROLIEiJ_P0066748	Fatty acid-binding protein 1, liver.	Platelet glycoprotein 4.	0.758
Fabp1	Fabp3	MGP_CAROLIEiJ_P0074212	MGP_CAROLIEiJ_P0064738	Fatty acid-binding protein 1, liver.	Fatty acid-binding protein 3, muscle and heart.	0.525
Fabp1	Scp2	MGP_CAROLIEiJ_P0074212	MGP_CAROLIEiJ_P0063438	Fatty acid-binding protein 1, liver.	Non-specific lipid-transfer protein.	0.508
Fabp3	Cd36	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0066748	Fatty acid-binding protein 3, muscle and heart.	Platelet glycoprotein 4.	0.580
Fabp3	Fabp1	MGP_CAROLIEiJ_P0064738	MGP_CAROLIEiJ_P0074212	Fatty acid-binding protein 3, muscle and heart.	Fatty acid-binding protein 1, liver.	0.525
Scp2	Fabp1	MGP_CAROLIEiJ_P0063438	MGP_CAROLIEiJ_P0074212	Non-specific lipid-transfer protein.	Fatty acid-binding protein 1, liver.	0.508