(22 nodes) Catenin complex network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ctnnb1	Catenin beta 1. (781 aa)
	Cdh13	Cadherin 13, H-cadherin. (714 aa)
	Cdh20	Cadherin 20, type 2. (801 aa)
	Cdh7	Cadherin-7 isoform X1. (785 aa)
	Apc2	Adenomatous polyposis coli protein 2 isoform X1. (2301 aa)
	Jup	Junction plakoglobin. (745 aa)
	Cdh9	Cadherin 9, type 2, T1-cadherin. (788 aa)
	Cdh10	Cadherin 10, type 2, T2-cadherin. (788 aa)
	Cdh2	Cadherin 2, type 1, N-cadherin. (906 aa)
	Apc	Adenomatosis polyposis coli protein. (2841 aa)
	Ctnna1	Catenin alpha-1 isoform X1. (906 aa)
	MGP_CAROLIEiJ_P0052606	annotation not available (897 aa)
	Ctnnd1	Catenin (cadherin-associated protein), delta 1. (905 aa)
	Cdh4	Cadherin 4, type 1, R-cadherin. (913 aa)
	Ctnna2	Catenin alpha-2 isoform X1. (966 aa)
	Cdh8	Cadherin-8 isoform X1. (799 aa)
	Cdh11	Cadherin 11, type 2, OB-cadherin. (767 aa)
	MGP_CAROLIEiJ_P0085700	annotation not available (185 aa)
	Cdh5	Cadherin 5, type 2, VE-cadherin. (784 aa)
	Cdh3	Cadherin 3, type 1, P-cadherin. (825 aa)
	Cdh1	Cadherin 1, type 1, E-cadherin. (884 aa)
	Cdh15	Cadherin 15, M-cadherin. (784 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Apc	Apc2	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0023909	Adenomatosis polyposis coli protein.	Adenomatous polyposis coli protein 2 isoform X1.	0.976
Apc	Cdh1	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0085902	Adenomatosis polyposis coli protein.	Cadherin 1, type 1, E-cadherin.	0.872
Apc	Cdh11	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0085699	Adenomatosis polyposis coli protein.	Cadherin 11, type 2, OB-cadherin.	0.415
Apc	Cdh13	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0086168	Adenomatosis polyposis coli protein.	Cadherin 13, H-cadherin.	0.608
Apc	Cdh15	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0086397	Adenomatosis polyposis coli protein.	Cadherin 15, M-cadherin.	0.602
Apc	Cdh2	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0046112	Adenomatosis polyposis coli protein.	Cadherin 2, type 1, N-cadherin.	0.767
Apc	Cdh3	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0085901	Adenomatosis polyposis coli protein.	Cadherin 3, type 1, P-cadherin.	0.559
Apc	Cdh4	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0056550	Adenomatosis polyposis coli protein.	Cadherin 4, type 1, R-cadherin.	0.505
Apc	Cdh7	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0019404	Adenomatosis polyposis coli protein.	Cadherin-7 isoform X1.	0.602
Apc	Cdh8	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0085695	Adenomatosis polyposis coli protein.	Cadherin-8 isoform X1.	0.590
Apc	Ctnna1	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0046312	Adenomatosis polyposis coli protein.	Catenin alpha-1 isoform X1.	0.865
Apc	Ctnna2	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0074398	Adenomatosis polyposis coli protein.	Catenin alpha-2 isoform X1.	0.688
Apc	Ctnnb1	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0090603	Adenomatosis polyposis coli protein.	Catenin beta 1.	0.999
Apc	Ctnnd1	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0052609	Adenomatosis polyposis coli protein.	Catenin (cadherin-associated protein), delta 1.	0.581
Apc	Jup	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0029838	Adenomatosis polyposis coli protein.	Junction plakoglobin.	0.934
Apc	MGP_CAROLIEiJ_P0052606	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0052606	Adenomatosis polyposis coli protein.	annotation not available	0.581
Apc	MGP_CAROLIEiJ_P0085700	MGP_CAROLIEiJ_P0046254	MGP_CAROLIEiJ_P0085700	Adenomatosis polyposis coli protein.	annotation not available	0.415
Apc2	Apc	MGP_CAROLIEiJ_P0023909	MGP_CAROLIEiJ_P0046254	Adenomatous polyposis coli protein 2 isoform X1.	Adenomatosis polyposis coli protein.	0.976
Apc2	Cdh1	MGP_CAROLIEiJ_P0023909	MGP_CAROLIEiJ_P0085902	Adenomatous polyposis coli protein 2 isoform X1.	Cadherin 1, type 1, E-cadherin.	0.782
Apc2	Cdh11	MGP_CAROLIEiJ_P0023909	MGP_CAROLIEiJ_P0085699	Adenomatous polyposis coli protein 2 isoform X1.	Cadherin 11, type 2, OB-cadherin.	0.452