(7 nodes) Alpha-beta T cell receptor complex network (Mus caroli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cd4	T-cell surface glycoprotein CD4 isoform X1. (457 aa)
	Cd3d	T-cell surface glycoprotein CD3 delta chain isoform X1. (173 aa)
	Cd3e	T-cell surface glycoprotein CD3 epsilon chain. (189 aa)
	Cd247	T-cell surface glycoprotein CD3 zeta chain isoform X1. (176 aa)
	Adgrv1	Adhesion G-protein coupled receptor V1. (6297 aa)
	Ptpn6	Tyrosine-protein phosphatase non-receptor type 6. (100 aa)
	Cd3g	T-cell surface glycoprotein CD3 gamma chain. (182 aa)

Your Current Organism:

Mus caroli

NCBI taxonomy Id: 10089
Other names: M. caroli, Mus formosanus, Ryukyu mouse, ricefield mouse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adgrv1	Cd3e	MGP_CAROLIEiJ_P0034962	MGP_CAROLIEiJ_P0087614	Adhesion G-protein coupled receptor V1.	T-cell surface glycoprotein CD3 epsilon chain.	0.489
Cd247	Cd3d	MGP_CAROLIEiJ_P0020938	MGP_CAROLIEiJ_P0087613	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD3 delta chain isoform X1.	0.999
Cd247	Cd3e	MGP_CAROLIEiJ_P0020938	MGP_CAROLIEiJ_P0087614	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD3 epsilon chain.	0.999
Cd247	Cd3g	MGP_CAROLIEiJ_P0020938	MGP_CAROLIEiJ_P0087610	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD3 gamma chain.	0.999
Cd247	Cd4	MGP_CAROLIEiJ_P0020938	MGP_CAROLIEiJ_P0076043	T-cell surface glycoprotein CD3 zeta chain isoform X1.	T-cell surface glycoprotein CD4 isoform X1.	0.707
Cd247	Ptpn6	MGP_CAROLIEiJ_P0020938	MGP_CAROLIEiJ_P0075974	T-cell surface glycoprotein CD3 zeta chain isoform X1.	Tyrosine-protein phosphatase non-receptor type 6.	0.987
Cd3d	Cd247	MGP_CAROLIEiJ_P0087613	MGP_CAROLIEiJ_P0020938	T-cell surface glycoprotein CD3 delta chain isoform X1.	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.999
Cd3d	Cd3e	MGP_CAROLIEiJ_P0087613	MGP_CAROLIEiJ_P0087614	T-cell surface glycoprotein CD3 delta chain isoform X1.	T-cell surface glycoprotein CD3 epsilon chain.	0.999
Cd3d	Cd3g	MGP_CAROLIEiJ_P0087613	MGP_CAROLIEiJ_P0087610	T-cell surface glycoprotein CD3 delta chain isoform X1.	T-cell surface glycoprotein CD3 gamma chain.	0.999
Cd3d	Cd4	MGP_CAROLIEiJ_P0087613	MGP_CAROLIEiJ_P0076043	T-cell surface glycoprotein CD3 delta chain isoform X1.	T-cell surface glycoprotein CD4 isoform X1.	0.518
Cd3d	Ptpn6	MGP_CAROLIEiJ_P0087613	MGP_CAROLIEiJ_P0075974	T-cell surface glycoprotein CD3 delta chain isoform X1.	Tyrosine-protein phosphatase non-receptor type 6.	0.866
Cd3e	Adgrv1	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0034962	T-cell surface glycoprotein CD3 epsilon chain.	Adhesion G-protein coupled receptor V1.	0.489
Cd3e	Cd247	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0020938	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.999
Cd3e	Cd3d	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0087613	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD3 delta chain isoform X1.	0.999
Cd3e	Cd3g	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0087610	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD3 gamma chain.	0.999
Cd3e	Cd4	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0076043	T-cell surface glycoprotein CD3 epsilon chain.	T-cell surface glycoprotein CD4 isoform X1.	0.804
Cd3e	Ptpn6	MGP_CAROLIEiJ_P0087614	MGP_CAROLIEiJ_P0075974	T-cell surface glycoprotein CD3 epsilon chain.	Tyrosine-protein phosphatase non-receptor type 6.	0.872
Cd3g	Cd247	MGP_CAROLIEiJ_P0087610	MGP_CAROLIEiJ_P0020938	T-cell surface glycoprotein CD3 gamma chain.	T-cell surface glycoprotein CD3 zeta chain isoform X1.	0.999
Cd3g	Cd3d	MGP_CAROLIEiJ_P0087610	MGP_CAROLIEiJ_P0087613	T-cell surface glycoprotein CD3 gamma chain.	T-cell surface glycoprotein CD3 delta chain isoform X1.	0.999
Cd3g	Cd3e	MGP_CAROLIEiJ_P0087610	MGP_CAROLIEiJ_P0087614	T-cell surface glycoprotein CD3 gamma chain.	T-cell surface glycoprotein CD3 epsilon chain.	0.999