19 items (mouse) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Lce1m	Late cornified envelope 1M. (182 aa)
	Lce1d	Late cornified envelope 1D. (133 aa)
	Lce1g	Late cornified envelope 1G. (139 aa)
	Lce1a2	Late cornified envelope 1A2. (149 aa)
	Lce1b	Late cornified envelope 1B. (137 aa)
	Lce1f	Late cornified envelope 1F. (147 aa)
	Lce1c	Late cornified envelope 1C. (147 aa)
	Lce1l	Late cornified envelope 1L. (135 aa)
	Lce1h	Late cornified envelope 1H. (140 aa)
	Lce1a1	Late cornified envelope 1A1. (143 aa)
	Sprr2a1	Small proline-rich protein 2A3; Cross-linked envelope protein of keratinocytes. It is a keratinocyte protein that first appears in the cell cytosol, but ultimately becomes cross-linked to membrane proteins by transglutaminase. All that results in the formation of an insoluble envelope beneath the plasma membrane (By similarity). Belongs to the cornifin (SPRR) family. (83 aa)
	Lce1i	Late cornified envelope 1I. (149 aa)
	Lce1e	Late cornified envelope 1E. (143 aa)
	Sprr2a2	Small proline-rich protein 2A2. (83 aa)
	Lce6a	Late cornified envelope 6A. (81 aa)
	2310050C09Rik	RIKEN cDNA 2310050C09 gene. (280 aa)
	Lce1k	Late cornified envelope 1K. (125 aa)
	Lce1j	Late cornified envelope 1J. (139 aa)
	Sprr2a3	Small proline-rich protein 2A3. (83 aa)

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
2310050C09Rik	Lce1a1	ENSMUSP00000126921	ENSMUSP00000073776	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1A1.	0.805
2310050C09Rik	Lce1a2	ENSMUSP00000126921	ENSMUSP00000029530	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1A2.	0.893
2310050C09Rik	Lce1b	ENSMUSP00000126921	ENSMUSP00000029531	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1B.	0.901
2310050C09Rik	Lce1c	ENSMUSP00000126921	ENSMUSP00000045573	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1C.	0.916
2310050C09Rik	Lce1d	ENSMUSP00000126921	ENSMUSP00000029524	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1D.	0.854
2310050C09Rik	Lce1e	ENSMUSP00000126921	ENSMUSP00000088380	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1E.	0.787
2310050C09Rik	Lce1f	ENSMUSP00000126921	ENSMUSP00000037349	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1F.	0.562
2310050C09Rik	Lce1i	ENSMUSP00000126921	ENSMUSP00000088379	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1I.	0.585
2310050C09Rik	Lce1j	ENSMUSP00000126921	ENSMUSP00000140507	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1J.	0.463
2310050C09Rik	Lce1l	ENSMUSP00000126921	ENSMUSP00000057762	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1L.	0.465
2310050C09Rik	Lce1m	ENSMUSP00000126921	ENSMUSP00000029520	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 1M.	0.805
2310050C09Rik	Lce6a	ENSMUSP00000126921	ENSMUSP00000114595	RIKEN cDNA 2310050C09 gene.	Late cornified envelope 6A.	0.833
2310050C09Rik	Sprr2a1	ENSMUSP00000126921	ENSMUSP00000083330	RIKEN cDNA 2310050C09 gene.	Small proline-rich protein 2A3; Cross-linked envelope protein of keratinocytes. It is a keratinocyte protein that first appears in the cell cytosol, but ultimately becomes cross-linked to membrane proteins by transglutaminase. All that results in the formation of an insoluble envelope beneath the plasma membrane (By similarity). Belongs to the cornifin (SPRR) family.	0.407
2310050C09Rik	Sprr2a2	ENSMUSP00000126921	ENSMUSP00000102950	RIKEN cDNA 2310050C09 gene.	Small proline-rich protein 2A2.	0.555
2310050C09Rik	Sprr2a3	ENSMUSP00000126921	ENSMUSP00000142110	RIKEN cDNA 2310050C09 gene.	Small proline-rich protein 2A3.	0.612
Lce1a1	2310050C09Rik	ENSMUSP00000073776	ENSMUSP00000126921	Late cornified envelope 1A1.	RIKEN cDNA 2310050C09 gene.	0.805
Lce1a1	Lce1a2	ENSMUSP00000073776	ENSMUSP00000029530	Late cornified envelope 1A1.	Late cornified envelope 1A2.	0.969
Lce1a1	Lce1b	ENSMUSP00000073776	ENSMUSP00000029531	Late cornified envelope 1A1.	Late cornified envelope 1B.	0.985
Lce1a1	Lce1c	ENSMUSP00000073776	ENSMUSP00000045573	Late cornified envelope 1A1.	Late cornified envelope 1C.	0.914
Lce1a1	Lce1d	ENSMUSP00000073776	ENSMUSP00000029524	Late cornified envelope 1A1.	Late cornified envelope 1D.	0.789