(5 nodes) Late cornified envelope protein network (Mus musculus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Lce1a2	Late cornified envelope 1A2. (149 aa)
	Lce1b	Late cornified envelope 1B. (137 aa)
	Lce1c	Late cornified envelope 1C. (147 aa)
	Lce1a1	Late cornified envelope 1A1. (143 aa)
	Lce1e	Late cornified envelope 1E. (143 aa)

Your Current Organism:

Mus musculus

NCBI taxonomy Id: 10090
Other names: LK3 transgenic mice, M. musculus, Mus sp. 129SV, house mouse, mouse, nude mice, transgenic mice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lce1a1	Lce1a2	ENSMUSP00000073776	ENSMUSP00000029530	Late cornified envelope 1A1.	Late cornified envelope 1A2.	0.969
Lce1a1	Lce1b	ENSMUSP00000073776	ENSMUSP00000029531	Late cornified envelope 1A1.	Late cornified envelope 1B.	0.985
Lce1a1	Lce1c	ENSMUSP00000073776	ENSMUSP00000045573	Late cornified envelope 1A1.	Late cornified envelope 1C.	0.914
Lce1a1	Lce1e	ENSMUSP00000073776	ENSMUSP00000088380	Late cornified envelope 1A1.	Late cornified envelope 1E.	0.809
Lce1a2	Lce1a1	ENSMUSP00000029530	ENSMUSP00000073776	Late cornified envelope 1A2.	Late cornified envelope 1A1.	0.969
Lce1a2	Lce1b	ENSMUSP00000029530	ENSMUSP00000029531	Late cornified envelope 1A2.	Late cornified envelope 1B.	0.970
Lce1a2	Lce1c	ENSMUSP00000029530	ENSMUSP00000045573	Late cornified envelope 1A2.	Late cornified envelope 1C.	0.921
Lce1a2	Lce1e	ENSMUSP00000029530	ENSMUSP00000088380	Late cornified envelope 1A2.	Late cornified envelope 1E.	0.914
Lce1b	Lce1a1	ENSMUSP00000029531	ENSMUSP00000073776	Late cornified envelope 1B.	Late cornified envelope 1A1.	0.985
Lce1b	Lce1a2	ENSMUSP00000029531	ENSMUSP00000029530	Late cornified envelope 1B.	Late cornified envelope 1A2.	0.970
Lce1b	Lce1c	ENSMUSP00000029531	ENSMUSP00000045573	Late cornified envelope 1B.	Late cornified envelope 1C.	0.969
Lce1b	Lce1e	ENSMUSP00000029531	ENSMUSP00000088380	Late cornified envelope 1B.	Late cornified envelope 1E.	0.941
Lce1c	Lce1a1	ENSMUSP00000045573	ENSMUSP00000073776	Late cornified envelope 1C.	Late cornified envelope 1A1.	0.914
Lce1c	Lce1a2	ENSMUSP00000045573	ENSMUSP00000029530	Late cornified envelope 1C.	Late cornified envelope 1A2.	0.921
Lce1c	Lce1b	ENSMUSP00000045573	ENSMUSP00000029531	Late cornified envelope 1C.	Late cornified envelope 1B.	0.969
Lce1c	Lce1e	ENSMUSP00000045573	ENSMUSP00000088380	Late cornified envelope 1C.	Late cornified envelope 1E.	0.909
Lce1e	Lce1a1	ENSMUSP00000088380	ENSMUSP00000073776	Late cornified envelope 1E.	Late cornified envelope 1A1.	0.809
Lce1e	Lce1a2	ENSMUSP00000088380	ENSMUSP00000029530	Late cornified envelope 1E.	Late cornified envelope 1A2.	0.914
Lce1e	Lce1b	ENSMUSP00000088380	ENSMUSP00000029531	Late cornified envelope 1E.	Late cornified envelope 1B.	0.941
Lce1e	Lce1c	ENSMUSP00000088380	ENSMUSP00000045573	Late cornified envelope 1E.	Late cornified envelope 1C.	0.909