(11 nodes) Synaptic vesicle to endosome fusion, and Autophagosome membrane docking network (Mus spretus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Stx6	Syntaxin 6. (255 aa)
	Vamp4	Vesicle-associated membrane protein 4. (119 aa)
	Stx8	Syntaxin 8. (236 aa)
	Vti1b	Vesicle transport through interaction with t-SNAREs 1B. (232 aa)
	Snap29	Synaptosomal-associated protein 29. (260 aa)
	Vti1a	Vesicle transport through interaction with t-SNAREs 1A. (217 aa)
	Napb	N-ethylmaleimide sensitive fusion protein attachment protein beta. (298 aa)
	Stx16	Syntaxin 16. (327 aa)
	Stx17	Syntaxin 17. (301 aa)
	Stx12	Syntaxin 12. (274 aa)
	Vamp8	Vesicle-associated membrane protein 8. (101 aa)

Your Current Organism:

Mus spretus

NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Napb	Snap29	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0042494	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Synaptosomal-associated protein 29.	0.979
Napb	Stx12	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0067424	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Syntaxin 12.	0.988
Napb	Stx16	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0058679	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Syntaxin 16.	0.988
Napb	Stx17	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0064783	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Syntaxin 17.	0.973
Napb	Stx6	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0021525	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Syntaxin 6.	0.984
Napb	Stx8	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0028754	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Syntaxin 8.	0.984
Napb	Vamp4	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0021840	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Vesicle-associated membrane protein 4.	0.981
Napb	Vamp8	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0077215	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Vesicle-associated membrane protein 8.	0.993
Napb	Vti1a	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0051172	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Vesicle transport through interaction with t-SNAREs 1A.	0.989
Napb	Vti1b	MGP_SPRETEiJ_P0057216	MGP_SPRETEiJ_P0034148	N-ethylmaleimide sensitive fusion protein attachment protein beta.	Vesicle transport through interaction with t-SNAREs 1B.	0.986
Snap29	Napb	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0057216	Synaptosomal-associated protein 29.	N-ethylmaleimide sensitive fusion protein attachment protein beta.	0.979
Snap29	Stx12	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0067424	Synaptosomal-associated protein 29.	Syntaxin 12.	0.987
Snap29	Stx16	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0058679	Synaptosomal-associated protein 29.	Syntaxin 16.	0.986
Snap29	Stx17	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0064783	Synaptosomal-associated protein 29.	Syntaxin 17.	0.999
Snap29	Stx6	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0021525	Synaptosomal-associated protein 29.	Syntaxin 6.	0.997
Snap29	Stx8	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0028754	Synaptosomal-associated protein 29.	Syntaxin 8.	0.980
Snap29	Vamp4	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0021840	Synaptosomal-associated protein 29.	Vesicle-associated membrane protein 4.	0.971
Snap29	Vamp8	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0077215	Synaptosomal-associated protein 29.	Vesicle-associated membrane protein 8.	0.999
Snap29	Vti1a	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0051172	Synaptosomal-associated protein 29.	Vesicle transport through interaction with t-SNAREs 1A.	0.972
Snap29	Vti1b	MGP_SPRETEiJ_P0042494	MGP_SPRETEiJ_P0034148	Synaptosomal-associated protein 29.	Vesicle transport through interaction with t-SNAREs 1B.	0.954