(39 nodes) Integral component of synaptic vesicle membrane network (Mus spretus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Oprd1	Opioid receptor, delta 1. (372 aa)
	Sv2a	Synaptic vesicle glycoprotein 2 a. (742 aa)
	Syt11	Synaptotagmin XI. (430 aa)
	Stx16	Syntaxin 16. (327 aa)
	Slc18a2	Solute carrier family 18 (vesicular monoamine), member 2. (517 aa)
	Slc6a7	Solute carrier family 6 (neurotransmitter transporter, L-proline), member 7. (637 aa)
	Ptprs	Protein tyrosine phosphatase, receptor type, S. (1907 aa)
	Atp6v1g2	ATPase, H+ transporting, lysosomal V1 subunit G2. (118 aa)
	Syngr1	Synaptogyrin 1. (234 aa)
	Mal2	Mal, T cell differentiation protein 2. (175 aa)
	Slc18a3	Solute carrier family 18 (vesicular monoamine), member 3. (530 aa)
	Synpr	Synaptoporin. (285 aa)
	Sv2c	Synaptic vesicle glycoprotein 2c. (727 aa)
	Scamp1	Secretory carrier membrane protein 1. (338 aa)
	Ptprn2	Protein tyrosine phosphatase, receptor type, N polypeptide 2. (1002 aa)
	Lamp1	Lysosomal-associated membrane protein 1. (406 aa)
	Clcn3	Chloride channel, voltage-sensitive 3. (866 aa)
	Scamp5	Secretory carrier membrane protein 5. (235 aa)
	Syp	Synaptophysin. (314 aa)
	Atp6v0a1	ATPase, H+ transporting, lysosomal V0 subunit A1. (839 aa)
	MGP_SPRETEiJ_P0028857	annotation not available (163 aa)
	Syt1	Synaptotagmin I. (421 aa)
	Atp2b1	ATPase, Ca++ transporting, plasma membrane 1. (1220 aa)
	Slc17a8	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8. (588 aa)
	Vamp4	Vesicle-associated membrane protein 4. (119 aa)
	Stx6	Syntaxin 6. (255 aa)
	Tmem163	Transmembrane protein 163. (288 aa)
	Vamp3	Vesicle-associated membrane protein 3. (103 aa)
	Slc30a3	Solute carrier family 30 (zinc transporter), member 3. (388 aa)
	Wfs1	Wolframin ER transmembrane glycoprotein. (890 aa)
	Gabra2	Gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2. (451 aa)
	Stx1a	Syntaxin 1A (brain). (288 aa)
	MGP_SPRETEiJ_P0079361	annotation not available (171 aa)
	Slc17a7	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7. (560 aa)
	Slc17a6	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6. (582 aa)
	Sv2b	Synaptic vesicle glycoprotein 2 b. (683 aa)
	Syt9	Synaptotagmin IX. (491 aa)
	Stx12	Syntaxin 12. (274 aa)
	Slc6a9	Solute carrier family 6 (neurotransmitter transporter, glycine), member 9. (637 aa)

Your Current Organism:

Mus spretus

NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp2b1	Clcn3	MGP_SPRETEiJ_P0025852	MGP_SPRETEiJ_P0087996	ATPase, Ca++ transporting, plasma membrane 1.	Chloride channel, voltage-sensitive 3.	0.559
Atp6v0a1	Atp6v1g2	MGP_SPRETEiJ_P0031375	MGP_SPRETEiJ_P0046394	ATPase, H+ transporting, lysosomal V0 subunit A1.	ATPase, H+ transporting, lysosomal V1 subunit G2.	0.999
Atp6v0a1	Stx12	MGP_SPRETEiJ_P0031375	MGP_SPRETEiJ_P0067424	ATPase, H+ transporting, lysosomal V0 subunit A1.	Syntaxin 12.	0.438
Atp6v0a1	Sv2a	MGP_SPRETEiJ_P0031375	MGP_SPRETEiJ_P0061680	ATPase, H+ transporting, lysosomal V0 subunit A1.	Synaptic vesicle glycoprotein 2 a.	0.426
Atp6v0a1	Sv2b	MGP_SPRETEiJ_P0031375	MGP_SPRETEiJ_P0083490	ATPase, H+ transporting, lysosomal V0 subunit A1.	Synaptic vesicle glycoprotein 2 b.	0.472
Atp6v0a1	Syp	MGP_SPRETEiJ_P0031375	MGP_SPRETEiJ_P0094566	ATPase, H+ transporting, lysosomal V0 subunit A1.	Synaptophysin.	0.412
Atp6v1g2	Atp6v0a1	MGP_SPRETEiJ_P0046394	MGP_SPRETEiJ_P0031375	ATPase, H+ transporting, lysosomal V1 subunit G2.	ATPase, H+ transporting, lysosomal V0 subunit A1.	0.999
Clcn3	Atp2b1	MGP_SPRETEiJ_P0087996	MGP_SPRETEiJ_P0025852	Chloride channel, voltage-sensitive 3.	ATPase, Ca++ transporting, plasma membrane 1.	0.559
Lamp1	Vamp3	MGP_SPRETEiJ_P0087247	MGP_SPRETEiJ_P0068559	Lysosomal-associated membrane protein 1.	Vesicle-associated membrane protein 3.	0.457
MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0079361	annotation not available	annotation not available	0.893
MGP_SPRETEiJ_P0028857	Slc17a6	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0083147	annotation not available	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6.	0.719
MGP_SPRETEiJ_P0028857	Slc17a7	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0082780	annotation not available	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7.	0.978
MGP_SPRETEiJ_P0028857	Slc17a8	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0025650	annotation not available	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8.	0.900
MGP_SPRETEiJ_P0028857	Slc18a2	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0051294	annotation not available	Solute carrier family 18 (vesicular monoamine), member 2.	0.962
MGP_SPRETEiJ_P0028857	Slc18a3	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0037871	annotation not available	Solute carrier family 18 (vesicular monoamine), member 3.	0.951
MGP_SPRETEiJ_P0028857	Slc30a3	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0069902	annotation not available	Solute carrier family 30 (zinc transporter), member 3.	0.444
MGP_SPRETEiJ_P0028857	Stx12	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0067424	annotation not available	Syntaxin 12.	0.979
MGP_SPRETEiJ_P0028857	Stx16	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0058679	annotation not available	Syntaxin 16.	0.960
MGP_SPRETEiJ_P0028857	Stx1a	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0074004	annotation not available	Syntaxin 1A (brain).	0.999
MGP_SPRETEiJ_P0028857	Stx6	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0021525	annotation not available	Syntaxin 6.	0.987