(13 nodes) SNARE complex assembly network (Mus spretus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Snca	Synuclein, alpha. (140 aa)
	Stx1a	Syntaxin 1A (brain). (288 aa)
	Vamp3	Vesicle-associated membrane protein 3. (103 aa)
	Snap25	Synaptosomal-associated protein 25. (206 aa)
	Stxbp1	Syntaxin binding protein 1. (603 aa)
	Stxbp6	Syntaxin binding protein 6 (amisyn). (210 aa)
	MGP_SPRETEiJ_P0028857	annotation not available (163 aa)
	Vamp4	Vesicle-associated membrane protein 4. (119 aa)
	Cltrn	Collectrin, amino acid transport regulator. (222 aa)
	Stx4a	Syntaxin 4A (placental). (298 aa)
	Uvrag	UV radiation resistance associated gene. (698 aa)
	MGP_SPRETEiJ_P0079361	annotation not available (171 aa)
	Vamp8	Vesicle-associated membrane protein 8. (101 aa)

Your Current Organism:

Mus spretus

NCBI taxonomy Id: 10096
Other names: Algerian mouse, M. spretus, Mus musculus spretus, western wild mouse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cltrn	Snap25	MGP_SPRETEiJ_P0097086	MGP_SPRETEiJ_P0056998	Collectrin, amino acid transport regulator.	Synaptosomal-associated protein 25.	0.611
MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0079361	annotation not available	annotation not available	0.893
MGP_SPRETEiJ_P0028857	Snap25	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0056998	annotation not available	Synaptosomal-associated protein 25.	0.999
MGP_SPRETEiJ_P0028857	Snca	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0076979	annotation not available	Synuclein, alpha.	0.924
MGP_SPRETEiJ_P0028857	Stx1a	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0074004	annotation not available	Syntaxin 1A (brain).	0.999
MGP_SPRETEiJ_P0028857	Stx4a	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0085948	annotation not available	Syntaxin 4A (placental).	0.999
MGP_SPRETEiJ_P0028857	Stxbp1	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0053263	annotation not available	Syntaxin binding protein 1.	0.987
MGP_SPRETEiJ_P0028857	Vamp3	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0068559	annotation not available	Vesicle-associated membrane protein 3.	0.992
MGP_SPRETEiJ_P0028857	Vamp4	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0021840	annotation not available	Vesicle-associated membrane protein 4.	0.983
MGP_SPRETEiJ_P0028857	Vamp8	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0077215	annotation not available	Vesicle-associated membrane protein 8.	0.962
MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0028857	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0028857	annotation not available	annotation not available	0.893
MGP_SPRETEiJ_P0079361	Snap25	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0056998	annotation not available	Synaptosomal-associated protein 25.	0.994
MGP_SPRETEiJ_P0079361	Snca	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0076979	annotation not available	Synuclein, alpha.	0.556
MGP_SPRETEiJ_P0079361	Stx1a	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0074004	annotation not available	Syntaxin 1A (brain).	0.981
MGP_SPRETEiJ_P0079361	Stx4a	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0085948	annotation not available	Syntaxin 4A (placental).	0.980
MGP_SPRETEiJ_P0079361	Stxbp1	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0053263	annotation not available	Syntaxin binding protein 1.	0.889
MGP_SPRETEiJ_P0079361	Vamp3	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0068559	annotation not available	Vesicle-associated membrane protein 3.	0.952
MGP_SPRETEiJ_P0079361	Vamp4	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0021840	annotation not available	Vesicle-associated membrane protein 4.	0.912
MGP_SPRETEiJ_P0079361	Vamp8	MGP_SPRETEiJ_P0079361	MGP_SPRETEiJ_P0077215	annotation not available	Vesicle-associated membrane protein 8.	0.818
Snap25	Cltrn	MGP_SPRETEiJ_P0056998	MGP_SPRETEiJ_P0097086	Synaptosomal-associated protein 25.	Collectrin, amino acid transport regulator.	0.611