STRINGSTRING
Tas1r1 Tas1r1 Il6 Il6 Nt5e Nt5e Clec3a Clec3a Col24a1 Col24a1 Ihh Ihh Mkx Mkx Cd79a Cd79a Itga10 Itga10 Col22a1 Col22a1 Usp38 Usp38 D3Z940_RAT D3Z940_RAT Grem1 Grem1 Usp35 Usp35 Arl5b Arl5b Acan Acan Zfp511 Zfp511 Cilp Cilp Col11a2 Col11a2 Col9a2 Col9a2 Ttc19 Ttc19 Adamts3 Adamts3 Runx2 Runx2 Prg4 Prg4 C1qtnf7 C1qtnf7 LOC103693323 LOC103693323 Ptprc Ptprc Gdf5 Gdf5 Comp Comp Adamts5 Adamts5 Cd34 Cd34 Col10a1 Col10a1 Cep295 Cep295 Igf1 Igf1 Col2a1 Col2a1 Matn3 Matn3 Arl5c Arl5c Mia Mia Sox9 Sox9 Col23a1 Col23a1 Adamts4 Adamts4 C1qtnf2 C1qtnf2 Il1b Il1b Thy1 Thy1 Mmp13 Mmp13 Mmp3 Mmp3 Col9a3 Col9a3 LOC103689974 LOC103689974
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tas1r1Taste receptor type 1 member 1; Putative taste receptor. TAS1R1/TAS1R3 responds to the umami taste stimulus (the taste of monosodium glutamate). Sequence differences within and between species can significantly influence the selectivity and specificity of taste responses. (840 aa)
Il6Interleukin-6; Cytokine with a wide variety of biological functions. It is a potent inducer of the acute phase response. Plays an essential role in the final differentiation of B-cells into Ig-secreting cells Involved in lymphocyte and monocyte differentiation. Acts on B-cells, T-cells, hepatocytes, hematopoietic progenitor cells and cells of the CNS. Required for the generation of T(H)17 cells. Also acts as a myokine. It is discharged into the bloodstream after muscle contraction and acts to increase the breakdown of fats and to improve insulin resistance. It induces myeloma and plasm [...] (211 aa)
Nt5e5'-nucleotidase; Hydrolyzes extracellular nucleotides into membrane permeable nucleosides. (576 aa)
Clec3aC-type lectin domain family 3, member A. (196 aa)
Col24a1Collagen type XXIV alpha 1 chain. (1352 aa)
IhhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (411 aa)
MkxMohawk homeobox. (315 aa)
Cd79aIg-like domain-containing protein. (235 aa)
Itga10Integrin subunit alpha 10; Belongs to the integrin alpha chain family. (1167 aa)
Col22a1Collagen type XXII alpha 1 chain. (1613 aa)
Usp38Ubiquitin-specific peptidase 38; Belongs to the peptidase C19 family. (1041 aa)
D3Z940_RATUncharacterized protein. (453 aa)
Grem1Gremlin-1; Cytokine that may play an important role during carcinogenesis and metanephric kidney organogenesis, as a BMP antagonist required for early limb outgrowth and patterning in maintaining the FGF4-SHH feedback loop. Down-regulates the BMP4 signaling in a dose-dependent manner (By similarity). Antagonist of BMP2; inhibits BMP2-mediated differentiation of osteoblasts (in vitro) (By similarity). Acts as inhibitor of monocyte chemotaxis. Can inhibit the growth or viability of normal cells but not transformed cells when is overexpressed. (184 aa)
Usp35Ubiquitin-specific peptidase 35; Belongs to the peptidase C19 family. (1007 aa)
Arl5bADP-ribosylation factor-like GTPase 5B; Belongs to the small GTPase superfamily. Arf family. (180 aa)
AcanAggrecan core protein; This proteoglycan is a major component of extracellular matrix of cartilagenous tissues. A major function of this protein is to resist compression in cartilage. It binds avidly to hyaluronic acid via an N-terminal globular region. May play a regulatory role in the matrix assembly of the cartilage. (2162 aa)
Zfp511Zinc finger protein 511 (Predicted), isoform CRA_c. (250 aa)
CilpCartilage intermediate layer protein. (1183 aa)
Col11a2Procollagen, type XI, alpha 2 (Mapped). (1650 aa)
Col9a2Procollagen, type IX, alpha 2 (Predicted). (688 aa)
Ttc19Tetratricopeptide repeat protein 19, mitochondrial; Required for the preservation of the structural and functional integrity of mitochondrial respiratory complex III by allowing the physiological turnover of the Rieske protein UQCRFS1. Involved in the clearance of UQCRFS1 N-terminal fragments, which are produced upon incorporation into the complex III and whose presence is detrimental for its catalytic activity; Belongs to the TTC19 family. (352 aa)
Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3. (910 aa)
Runx2Runt-related transcription factor 2; Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. Inhibits KAT6B-dependent transcriptional activation. In osteoblasts, supports transcription activati [...] (529 aa)
Prg4Proteoglycan 4. (1060 aa)
C1qtnf7C1q and TNF-related 7. (296 aa)
LOC103693323Collagen alpha-1(XXIII) chain. (532 aa)
PtprcReceptor-type tyrosine-protein phosphatase C; Protein tyrosine-protein phosphatase required for T-cell activation through the antigen receptor. Acts as a positive regulator of T-cell coactivation upon binding to DPP4. The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one. Upon T-cell activation, recruits and dephosphorylates SKAP1 and FYN (By similarity). Dephosphorylates LYN, and thereby modulates LYN activity (By similarity). (1273 aa)
Gdf5Growth differentiation factor 5. (495 aa)
CompCartilage oligomeric matrix protein; May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BI [...] (755 aa)
Adamts5ADAM metallopeptidase with thrombospondin type 1 motif, 5. (927 aa)
Cd34CD34 antigen (Predicted). (386 aa)
Col10a1Collagen type X alpha 1 chain. (680 aa)
Cep295Centrosomal protein of 295 kDa; Centriole-enriched microtubule-binding protein involved in centriole biogenesis. Essential for the generation of the distal portion of new-born centrioles in a CENPJ- and CEP120-mediated elongation dependent manner during the cell cycle S/G2 phase after formation of the initiating cartwheel structure. Required for the recruitment of centriolar proteins, such as POC1B, POC5 and CEP135, into the distal portion of centrioles. Also required for centriole-to- centrosome conversion during mitotic progression, but is dispensable for cartwheel removal or centrio [...] (2473 aa)
Igf1Insulin-like growth factor I; The insulin-like growth factors, isolated from plasma, are structurally and functionally related to insulin but have a much higher growth-promoting activity. May be a physiological regulator of [1-14C]- 2-deoxy-D-glucose (2DG) transport and glycogen synthesis in osteoblasts. Stimulates glucose transport in bone-derived osteoblastic (PyMS) cells and is effective at much lower concentrations than insulin, not only regarding glycogen and DNA synthesis but also with regard to enhancing glucose uptake. May play a role in synapse maturation. Ca(2+)-dependent exo [...] (159 aa)
Col2a1Collagen alpha-1(II) chain; Type II collagen is specific for cartilaginous tissues. It is essential for the normal embryonic development of the skeleton, for linear growth and for the ability of cartilage to resist compressive forces. (1419 aa)
Matn3Matrilin 3. (463 aa)
Arl5cSimilar to ADP-ribosylation-like factor 12 protein (Predicted); Belongs to the small GTPase superfamily. Arf family. (179 aa)
MiaMelanoma-derived growth regulatory protein; May function during cartilage development and maintenance; Belongs to the MIA/OTOR family. (130 aa)
Sox9SRY-box transcription factor 9. (507 aa)
Col23a1Collagen alpha-1(XXIII) chain. (399 aa)
Adamts4A disintegrin and metalloproteinase with thrombospondin motifs 4; Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May play an important role in the destruction of aggrecan in arthritic diseases. Cleaves aggrecan at the '392-Glu-|- Ala-393' site. (851 aa)
C1qtnf2C1q and TNF-related 2. (294 aa)
Il1bInterleukin-1 beta; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production. Promotes Th17 differentiation of T-cells. Synergizes with IL12/interleukin-12 to induce IFNG synthesis from T- helper 1 (Th1) cells. (268 aa)
Thy1Thy-1 membrane glycoprotein; May play a role in cell-cell or cell-ligand interactions during synaptogenesis and other events in the brain. (161 aa)
Mmp13Collagenase 3; Plays a role in the degradation of extracellular matrix proteins including fibrillar collagen, fibronectin, TNC and ACAN. Cleaves triple helical collagens, including type I, type II and type III collagen, but has the highest activity with soluble type II collagen. Can also degrade collagen type IV, type XIV and type X. May also function by activating or degrading key regulatory proteins, such as TGFB1 and CCN2. Plays a role in wound healing, tissue remodeling, cartilage degradation, bone development, bone mineralization and ossification. Required for normal embryonic bon [...] (472 aa)
Mmp3Stromelysin-1; Can degrade fibronectin, laminin, gelatins of type I, III, IV, and V; collagens III, IV, X, and IX, and cartilage proteoglycans. Activates procollagenase; Belongs to the peptidase M10A family. (473 aa)
Col9a3Collagen type IX alpha 3 chain. (680 aa)
LOC103689974Tumor necrosis factor ligand superfamily member 11, membrane form; Cytokine that binds to TNFRSF11B/OPG and to TNFRSF11A/RANK. Osteoclast differentiation and activation factor. Augments the ability of dendritic cells to stimulate naive T-cell proliferation. May be an important regulator of interactions between T-cells and dendritic cells and may play a role in the regulation of the T-cell-dependent immune response. May also play an important role in enhanced bone-resorption in humoral hypercalcemia of malignancy. Induces osteoclastogenesis by activating multiple signaling pathways in o [...] (318 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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