(27 nodes) Mostly uncharacterized, incl. Cerebellar granular layer maturation, and Sperm-tail PG-rich repeat network (Rattus norvegicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Necab1	N-terminal EF-hand calcium-binding protein 1. (352 aa)
	Fads2l1	Fatty acid desaturase 2-like 1. (487 aa)
	F1LN81_RAT	Uncharacterized protein. (478 aa)
	Soga3	SOGA family member 3. (944 aa)
	RGD1311933	Similar to RIKEN cDNA 2310057J18. (336 aa)
	Zfp64	RCG32340, isoform CRA_a. (678 aa)
	Odf3	Outer dense fiber of sperm tails 3 (Predicted). (256 aa)
	Scd4	Stearoyl-coenzyme A desaturase 4; Belongs to the fatty acid desaturase type 1 family. (353 aa)
	Ptprk	Receptor-like protein tyrosine phosphatase kappa. (1439 aa)
	Caly	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis. (226 aa)
	Fam83f	Family with sequence similarity 83, member F. (500 aa)
	LOC100911402	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation. (149 aa)
	Pcdhgb8	Protocadherin gamma subfamily B, 8. (808 aa)
	Pcdhga8	Protocadherin gamma subfamily A, 8. (808 aa)
	Dipk1a	Divergent protein kinase domain 1A. (428 aa)
	RGD1311847	Uncharacterized protein C19orf44 homolog. (624 aa)
	Kiaa0408L	RCG42077, isoform CRA_b. (637 aa)
	Vsig2	V-set and immunoglobulin domain containing 2 (Predicted). (328 aa)
	Stpg1	O(6)-methylguanine-induced apoptosis 2; May positively contribute to the induction of apoptosis triggered by O(6)-methylguanine; Belongs to the STPG1 family. (341 aa)
	Pcdhgb5	Protocadherin gamma subfamily B, 5. (799 aa)
	Evi5	Ecotropic viral integration site 5. (809 aa)
	Tshz2	Teashirt zinc finger family member 2. (1017 aa)
	Tbc1d16	TBC1 domain family, member 16. (765 aa)
	Cend1	Cell cycle exit and neuronal differentiation protein 1-like. (149 aa)
	Hic2	Hypermethylated in cancer 2 (Predicted). (622 aa)
	LOC680989	C2H2-type domain-containing protein. (813 aa)
	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2. (226 aa)

Your Current Organism:

Rattus norvegicus

NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Caly	Cend1	ENSRNOP00000024766	ENSRNOP00000066509	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	Cell cycle exit and neuronal differentiation protein 1-like.	0.464
Caly	LOC100911402	ENSRNOP00000024766	ENSRNOP00000024867	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation.	0.529
Caly	Zfp64	ENSRNOP00000024766	ENSRNOP00000017063	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	RCG32340, isoform CRA_a.	0.520
Cend1	Caly	ENSRNOP00000066509	ENSRNOP00000024766	Cell cycle exit and neuronal differentiation protein 1-like.	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	0.464
Cend1	Dipk1a	ENSRNOP00000066509	ENSRNOP00000031951	Cell cycle exit and neuronal differentiation protein 1-like.	Divergent protein kinase domain 1A.	0.462
Cend1	Hic2	ENSRNOP00000066509	ENSRNOP00000072722	Cell cycle exit and neuronal differentiation protein 1-like.	Hypermethylated in cancer 2 (Predicted).	0.423
Cend1	Tbc1d16	ENSRNOP00000066509	ENSRNOP00000065232	Cell cycle exit and neuronal differentiation protein 1-like.	TBC1 domain family, member 16.	0.474
Cend1	Vsig2	ENSRNOP00000066509	ENSRNOP00000045465	Cell cycle exit and neuronal differentiation protein 1-like.	V-set and immunoglobulin domain containing 2 (Predicted).	0.409
Cml2	Scd4	ENSRNOP00000074341	ENSRNOP00000017834	N-acetyltransferase 8 (GCN5-related) family member 2.	Stearoyl-coenzyme A desaturase 4; Belongs to the fatty acid desaturase type 1 family.	0.410
Cml2	Tshz2	ENSRNOP00000074341	ENSRNOP00000065119	N-acetyltransferase 8 (GCN5-related) family member 2.	Teashirt zinc finger family member 2.	0.412
Dipk1a	Cend1	ENSRNOP00000031951	ENSRNOP00000066509	Divergent protein kinase domain 1A.	Cell cycle exit and neuronal differentiation protein 1-like.	0.462
Dipk1a	Evi5	ENSRNOP00000031951	ENSRNOP00000058347	Divergent protein kinase domain 1A.	Ecotropic viral integration site 5.	0.441
Dipk1a	Hic2	ENSRNOP00000031951	ENSRNOP00000072722	Divergent protein kinase domain 1A.	Hypermethylated in cancer 2 (Predicted).	0.582
Dipk1a	LOC100911402	ENSRNOP00000031951	ENSRNOP00000024867	Divergent protein kinase domain 1A.	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation.	0.438
Dipk1a	Tbc1d16	ENSRNOP00000031951	ENSRNOP00000065232	Divergent protein kinase domain 1A.	TBC1 domain family, member 16.	0.623
Dipk1a	Vsig2	ENSRNOP00000031951	ENSRNOP00000045465	Divergent protein kinase domain 1A.	V-set and immunoglobulin domain containing 2 (Predicted).	0.567
Evi5	Dipk1a	ENSRNOP00000058347	ENSRNOP00000031951	Ecotropic viral integration site 5.	Divergent protein kinase domain 1A.	0.441
Evi5	Odf3	ENSRNOP00000058347	ENSRNOP00000017562	Ecotropic viral integration site 5.	Outer dense fiber of sperm tails 3 (Predicted).	0.677
Hic2	Cend1	ENSRNOP00000072722	ENSRNOP00000066509	Hypermethylated in cancer 2 (Predicted).	Cell cycle exit and neuronal differentiation protein 1-like.	0.423
Hic2	Dipk1a	ENSRNOP00000072722	ENSRNOP00000031951	Hypermethylated in cancer 2 (Predicted).	Divergent protein kinase domain 1A.	0.582

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