(12 nodes) Mixed, incl. Cerebellar granular layer maturation, and Sperm-tail PG-rich repeat network (Rattus norvegicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Odf3	Outer dense fiber of sperm tails 3 (Predicted). (256 aa)
	Caly	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis. (226 aa)
	Fam83f	Family with sequence similarity 83, member F. (500 aa)
	LOC100911402	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation. (149 aa)
	Pcdhga8	Protocadherin gamma subfamily A, 8. (808 aa)
	Dipk1a	Divergent protein kinase domain 1A. (428 aa)
	Vsig2	V-set and immunoglobulin domain containing 2 (Predicted). (328 aa)
	Stpg1	O(6)-methylguanine-induced apoptosis 2; May positively contribute to the induction of apoptosis triggered by O(6)-methylguanine; Belongs to the STPG1 family. (341 aa)
	Evi5	Ecotropic viral integration site 5. (809 aa)
	Tbc1d16	TBC1 domain family, member 16. (765 aa)
	Cend1	Cell cycle exit and neuronal differentiation protein 1-like. (149 aa)
	Hic2	Hypermethylated in cancer 2 (Predicted). (622 aa)

Your Current Organism:

Rattus norvegicus

NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Caly	Cend1	ENSRNOP00000024766	ENSRNOP00000066509	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	Cell cycle exit and neuronal differentiation protein 1-like.	0.464
Caly	LOC100911402	ENSRNOP00000024766	ENSRNOP00000024867	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation.	0.529
Cend1	Caly	ENSRNOP00000066509	ENSRNOP00000024766	Cell cycle exit and neuronal differentiation protein 1-like.	Neuron-specific vesicular protein calcyon; Interacts with clathrin light chain A and stimulates clathrin self-assembly and clathrin-mediated endocytosis.	0.464
Cend1	Dipk1a	ENSRNOP00000066509	ENSRNOP00000031951	Cell cycle exit and neuronal differentiation protein 1-like.	Divergent protein kinase domain 1A.	0.462
Cend1	Hic2	ENSRNOP00000066509	ENSRNOP00000072722	Cell cycle exit and neuronal differentiation protein 1-like.	Hypermethylated in cancer 2 (Predicted).	0.423
Cend1	Tbc1d16	ENSRNOP00000066509	ENSRNOP00000065232	Cell cycle exit and neuronal differentiation protein 1-like.	TBC1 domain family, member 16.	0.474
Cend1	Vsig2	ENSRNOP00000066509	ENSRNOP00000045465	Cell cycle exit and neuronal differentiation protein 1-like.	V-set and immunoglobulin domain containing 2 (Predicted).	0.409
Dipk1a	Cend1	ENSRNOP00000031951	ENSRNOP00000066509	Divergent protein kinase domain 1A.	Cell cycle exit and neuronal differentiation protein 1-like.	0.462
Dipk1a	Evi5	ENSRNOP00000031951	ENSRNOP00000058347	Divergent protein kinase domain 1A.	Ecotropic viral integration site 5.	0.441
Dipk1a	Hic2	ENSRNOP00000031951	ENSRNOP00000072722	Divergent protein kinase domain 1A.	Hypermethylated in cancer 2 (Predicted).	0.582
Dipk1a	LOC100911402	ENSRNOP00000031951	ENSRNOP00000024867	Divergent protein kinase domain 1A.	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation.	0.438
Dipk1a	Tbc1d16	ENSRNOP00000031951	ENSRNOP00000065232	Divergent protein kinase domain 1A.	TBC1 domain family, member 16.	0.623
Dipk1a	Vsig2	ENSRNOP00000031951	ENSRNOP00000045465	Divergent protein kinase domain 1A.	V-set and immunoglobulin domain containing 2 (Predicted).	0.567
Evi5	Dipk1a	ENSRNOP00000058347	ENSRNOP00000031951	Ecotropic viral integration site 5.	Divergent protein kinase domain 1A.	0.441
Evi5	Odf3	ENSRNOP00000058347	ENSRNOP00000017562	Ecotropic viral integration site 5.	Outer dense fiber of sperm tails 3 (Predicted).	0.677
Hic2	Cend1	ENSRNOP00000072722	ENSRNOP00000066509	Hypermethylated in cancer 2 (Predicted).	Cell cycle exit and neuronal differentiation protein 1-like.	0.423
Hic2	Dipk1a	ENSRNOP00000072722	ENSRNOP00000031951	Hypermethylated in cancer 2 (Predicted).	Divergent protein kinase domain 1A.	0.582
Hic2	LOC100911402	ENSRNOP00000072722	ENSRNOP00000024867	Hypermethylated in cancer 2 (Predicted).	Cell cycle exit and neuronal differentiation protein 1; Involved in neuronal differentiation.	0.411
Hic2	Tbc1d16	ENSRNOP00000072722	ENSRNOP00000065232	Hypermethylated in cancer 2 (Predicted).	TBC1 domain family, member 16.	0.611
Hic2	Vsig2	ENSRNOP00000072722	ENSRNOP00000045465	Hypermethylated in cancer 2 (Predicted).	V-set and immunoglobulin domain containing 2 (Predicted).	0.541

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About