STRINGSTRING
Kpna6 Kpna6 Ran Ran Pom121 Pom121 Nup153 Nup153 Ranbp1 Ranbp1 Nup54 Nup54 Nup85 Nup85 Nxt1 Nxt1 Nup37 Nup37 Rangrf Rangrf Snupn Snupn Nup210 Nup210 Nup88 Nup88 Nup107 Nup107 Xpot Xpot Cse1l Cse1l Ipo9 Ipo9 Kpnb1 Kpnb1 Nup35 Nup35 Srsf4 Srsf4 Nupl2 Nupl2 Ipo7 Ipo7 Xpo1 Xpo1 Ndc1 Ndc1 Sec13 Sec13 Kpna4 Kpna4 Nup205 Nup205 Ipo5 Ipo5 Nxf2 Nxf2 Nup58 Nup58 Ddx25 Ddx25 Nup50 Nup50 Xpo7 Xpo7 Aaas Aaas Gle1 Gle1 Xpo6 Xpo6 Nup133 Nup133 Ncoa5 Ncoa5 Nup93 Nup93 Nutf2 Nutf2 Nxt2 Nxt2 Xpo5 Xpo5 Nxf1 Nxf1 Ipo4 Ipo4 Ipo13 Ipo13 Nup98 Nup98 Rae1 Rae1 1700123L14Rik 1700123L14Rik Nup188 Nup188 Kpna3 Kpna3 Nxf3 Nxf3 Nup214 Nup214 Nup160 Nup160 Nxf7 Nxf7 Rasl2-9 Rasl2-9 Tnpo3 Tnpo3 RGD1306195 RGD1306195 RGD1565693 RGD1565693 Adgrd1 Adgrd1 Tpr Tpr Nxf5 Nxf5 M0R627_RAT M0R627_RAT LOC100359600 LOC100359600 Ipo11 Ipo11 Nup214-2 Nup214-2 Nup62 Nup62 Kpna7 Kpna7 Pom121l2 Pom121l2 Nup43 Nup43 Kpna1 Kpna1 Ahctf1 Ahctf1 A0A0G2K222_RAT A0A0G2K222_RAT Rcc1 Rcc1 Nup155 Nup155 Ranbp6 Ranbp6 Ranbp17 Ranbp17 Nup62cl Nup62cl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Kpna6Importin subunit alpha; Functions in nuclear protein import. (541 aa)
RanGTP-binding nuclear protein Ran; GTPase involved in nucleocytoplasmic transport, participating both to the import and the export from the nucleus of proteins and RNAs. Switches between a cytoplasmic GDP- and a nuclear GTP-bound state by nucleotide exchange and GTP hydrolysis. Nuclear import receptors such as importin beta bind their substrates only in the absence of GTP- bound RAN and release them upon direct interaction with GTP-bound RAN, while export receptors behave in the opposite way. Thereby, RAN controls cargo loading and release by transport receptors in the proper compartment [...] (216 aa)
Pom121Nuclear envelope pore membrane protein POM 121; Essential component of the nuclear pore complex (NPC). The repeat-containing domain may be involved in anchoring components of the pore complex to the pore membrane. When overexpressed in cells induces the formation of cytoplasmic annulate lamellae (AL); Belongs to the POM121 family. (1199 aa)
Nup153Nuclear pore complex protein Nup153; Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Functions as a scaffolding element in the nuclear phase of the NPC essential for normal nucleocytoplasmic transport of proteins and mRNAs. Involved in the quality control and retention of unspliced mRNAs in the nucleus; in association with TPR, regulates the nuclear export of unspliced mRNA species bearing constitutive transport element (CTE) in a NXF1- and KHDRBS1-independent manner. Mediates TPR anchoring to the nuclear membrane at NPC [...] (1468 aa)
Ranbp1RAN-binding protein 1. (203 aa)
Nup54Nuclear pore complex protein Nup54; Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane. (510 aa)
Nup85Nuclear pore complex protein Nup85; Essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP96/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol 3-kinase-Rac-lammellipodium protrusion cascade. Invo [...] (656 aa)
Nxt1NTF2-related export protein 1 (Predicted), isoform CRA_a. (140 aa)
Nup37Nucleoporin 37 (Predicted), isoform CRA_a. (326 aa)
RangrfRAN guanine nucleotide release factor. (185 aa)
SnupnSnurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. (358 aa)
Nup210Nuclear pore membrane glycoprotein 210; Nucleoporin essential for nuclear pore assembly and fusion, nuclear pore spacing, as well as structural integrity. (1886 aa)
Nup88Nuclear pore complex protein Nup88; Component of nuclear pore complex. (742 aa)
Nup107Nuclear pore complex protein Nup107; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance. Required for the assembly of peripheral proteins into the NPC. May anchor NUP62 to the NPC. Involved in nephrogenesis. Belongs to the nucleoporin Nup84/Nup107 family. (925 aa)
XpotExportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (728 aa)
Cse1lChromosome segregation 1-like (S. cerevisiae) (Predicted). (971 aa)
Ipo9Importin 9 (Predicted). (1041 aa)
Kpnb1Importin subunit beta-1; Functions in nuclear protein import, either in association with an adapter protein, like an importin-alpha subunit, which binds to nuclear localization signals (NLS) in cargo substrates, or by acting as autonomous nuclear transport receptor. Acting autonomously, serves itself as NLS receptor. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic [...] (876 aa)
Nup35Nucleoporin NUP35; Functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. May play a role in the association of MAD1 with the NPC (By similarity). (325 aa)
Srsf4Serine and arginine-rich-splicing factor 4. (488 aa)
Nupl2Similar to nucleoporin like 2 (Predicted), isoform CRA_a. (418 aa)
Ipo7Importin 7 (Predicted), isoform CRA_c. (1038 aa)
Xpo1Exportin-1; Mediates the nuclear export of cellular proteins (cargos) bearing a leucine-rich nuclear export signal (NES) and of RNAs. In the nucleus, in association with RANBP3, binds cooperatively to the NES on its target protein and to the GTPase Ran in its active GTP-bound form. Docking of this complex to the nuclear pore complex (NPC) is mediated through binding to nucleoporins. Upon transit of a nuclear export complex into the cytoplasm, disassembling of the complex and hydrolysis of Ran-GTP to Ran-GDP (induced by RANBP1 and RANGAP1, respectively) cause release of the cargo from t [...] (1071 aa)
Ndc1Nucleoporin NDC1; Component of the nuclear pore complex (NPC), which plays a key role in de novo assembly and insertion of NPC in the nuclear envelope. Required for NPC and nuclear envelope assembly, possibly by forming a link between the nuclear envelope membrane and soluble nucleoporins, thereby anchoring the NPC in the membrane (By similarity); Belongs to the NDC1 family. (795 aa)
Sec13Protein SEC13 homolog; Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles. Required for the exit of adipsin (CFD/ADN), an adipocyte-secreted protein from the endoplasmic reticulum; Belongs to the WD repeat SEC13 family. (322 aa)
Kpna4Importin subunit alpha; Functions in nuclear protein import. (521 aa)
Nup205Nucleoporin 205kDa (Predicted). (2008 aa)
Ipo5Importin 5. (1097 aa)
Nxf2Nuclear RNA export factor 2. (619 aa)
Nup58Nucleoporin p58/p45; Component of the nuclear pore complex, a complex required for the trafficking across the nuclear membrane. (585 aa)
Ddx25ATP-dependent RNA helicase DDX25; ATP-dependent RNA helicase. Required for mRNA export and translation regulation during spermatid development (By similarity). (483 aa)
Nup50Nuclear pore complex protein Nup50; Component of the nuclear pore complex that has a direct role in nuclear protein import. Actively displaces NLSs from importin-alpha, and facilitates disassembly of the importin-alpha:beta-cargo complex and importin recycling. Interacts with regulatory proteins of cell cycle progression including CDKN1B. This interaction is required for correct intracellular transport and degradation of CDKN1B. (467 aa)
Xpo7Exportin 7. (1090 aa)
AaasAchalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A) (Predicted), isoform CRA_a. (546 aa)
Gle1Nucleoporin GLE1; Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC) (By similarity). (698 aa)
Xpo6Exportin 6, isoform CRA_c. (1125 aa)
Nup133Nucleoporin 133. (1154 aa)
Ncoa5Nuclear receptor coactivator 5 (Predicted). (578 aa)
Nup93Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance. May anchor nucleoporins, but not NUP153 and TPR, to the NPC. During renal development, regulates podocyte migration and proliferation through SMAD4 signaling. (819 aa)
Nutf2Nuclear transport factor 2; Mediates the import of GDP-bound RAN from the cytoplasm into the nucleus which is essential for the function of RAN in cargo receptor-mediated nucleocytoplasmic transport. Thereby, plays indirectly a more general role in cargo receptor-mediated nucleocytoplasmic transport. Interacts with GDP-bound RAN in the cytosol, recruits it to the nuclear pore complex via its interaction with nucleoporins and promotes its nuclear import. (127 aa)
Nxt2NTF2-related export protein 2; Regulator of protein export for NES-containing proteins. Also plays a role in mRNA nuclear export (By similarity). (172 aa)
Xpo5Exportin 5. (1204 aa)
Nxf1Nuclear RNA export factor 1; Involved in the nuclear export of mRNA species bearing retroviral constitutive transport elements (CTE) and in the export of mRNA from the nucleus to the cytoplasm (TAP/NFX1 pathway). The NXF1- NXT1 heterodimer is involved in the export of HSP70 mRNA in conjunction with ALYREF/THOC4 and THOC5 components of the TREX complex. ALYREF/THOC4-bound mRNA is thought to be transferred to the NXF1-NXT1 heterodimer for export. Also involved in nuclear export of m6A- containing mRNAs: interaction between SRSF3 and YTHDC1 facilitates m6A- containing mRNA-binding to both [...] (618 aa)
Ipo4Importin 4 (Predicted), isoform CRA_b. (1081 aa)
Ipo13Importin-13; Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis re [...] (963 aa)
Nup98Nuclear pore complex protein Nup98-Nup96; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance. Involved in the bidirectional transport across the NPC. May anchor NUP153 and TPR to the NPC. Belongs to the nucleoporin GLFG family. (1816 aa)
Rae1mRNA export factor; Plays a role in mitotic bipolar spindle formation. Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton. Belongs to the WD repeat rae1 family. (368 aa)
1700123L14RikNpap60 protein. (436 aa)
Nup188Nucleoporin 188. (1541 aa)
Kpna3Importin subunit alpha; Functions in nuclear protein import. (521 aa)
Nxf3Nuclear RNA export factor 3. (557 aa)
Nup214Nucleoporin 214. (1790 aa)
Nup160Nucleoporin 160. (1226 aa)
Nxf7Nuclear RNA export factor 7. (614 aa)
Rasl2-9GTP-binding nuclear protein Ran, testis-specific isoform; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity). (216 aa)
Tnpo3Transportin 3. (923 aa)
RGD1306195GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (216 aa)
RGD1565693Uncharacterized protein. (698 aa)
Adgrd1Adhesion G protein-coupled receptor D1; Belongs to the G-protein coupled receptor 2 family. (903 aa)
TprNucleoprotein TPR; Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Functions as a scaffolding element in the nuclear phase of the NPC essential for normal nucleocytoplasmic transport of proteins and mRNAs, plays a role in the establishment of nuclear-peripheral chromatin compartmentalization in interphase, and in the mitotic spindle checkpoint signaling during mitosis. Involved in the quality control and retention of unspliced mRNAs in the nucleus; in association with NUP153, regulates the nuclear export of unspliced mRNA [...] (2360 aa)
Nxf5NTF2 domain-containing protein. (441 aa)
M0R627_RATGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (197 aa)
LOC100359600Karyopherin alpha 2-like. (529 aa)
Ipo11Importin 11. (976 aa)
Nup214-2Nucleoporin 214. (279 aa)
Nup62Nuclear pore glycoprotein p62; Essential component of the nuclear pore complex. The N-terminal is probably involved in nucleocytoplasmic transport (By similarity). The C-terminal is involved in protein-protein interaction probably via coiled-coil formation, promotes its association with centrosomes and may function in anchorage of p62 to the pore complex (By similarity). Plays a role in mitotic cell cycle progression by regulating centrosome segregation, centriole maturation and spindle orientation (By similarity). It might be involved in protein recruitment to the centrosome after nuc [...] (525 aa)
Kpna7Importin subunit alpha; Functions in nuclear protein import. (500 aa)
Pom121l2POM121 transmembrane nucleoporin-like 2. (519 aa)
Nup43LOC683983 protein. (378 aa)
Kpna1Importin subunit alpha-5; Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are [...] (538 aa)
Ahctf1AT hook-containing transcription factor 1. (2312 aa)
A0A0G2K222_RATUncharacterized protein. (453 aa)
Rcc1Regulator of chromosome condensation 1. (421 aa)
Nup155Nuclear pore complex protein Nup155; Essential component of nuclear pore complex. Could be essessential for embryogenesis (By similarity). Nucleoporins may be involved both in binding and translocating proteins during nucleocytoplasmic transport. (1390 aa)
Ranbp6RAN-binding protein 6. (1105 aa)
Ranbp17RAN-binding protein 17. (1108 aa)
Nup62clSimilar to Nucleoporin 62 (Predicted). (273 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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