STRINGSTRING
Col4a1 Col4a1 Col4a3 Col4a3 Otol1 Otol1 Col4a4 Col4a4 Col4a2 Col4a2 Col4a5 Col4a5 Col4a6 Col4a6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Col4a1Collagen type IV alpha 1 chain. (1669 aa)
Col4a3Collagen type IV alpha 3 chain. (1671 aa)
Otol1Otolin 1. (482 aa)
Col4a4Collagen type IV alpha 4 chain. (159 aa)
Col4a2Collagen type IV alpha 2 chain. (1645 aa)
Col4a5Collagen type IV alpha 5 chain. (1691 aa)
Col4a6Collagen type IV alpha 6 chain. (1638 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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