STRINGSTRING
Suz12 Suz12 Hnrnpu Hnrnpu Jarid2 Jarid2 Rbm15 Rbm15 Rlim-2 Rlim-2 Cdyl Cdyl Eif1 Eif1 Prdm14 Prdm14 Lrif1 Lrif1 Smchd1 Smchd1 Rbm15b Rbm15b Mettl3 Mettl3 Exosc10 Exosc10 Rlim Rlim Ythdc1 Ythdc1 Pcgf3 Pcgf3 Brca1 Brca1 Pcgf5 Pcgf5 Upf1 Upf1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Suz12SUZ12 polycomb repressive complex 2 subunit. (740 aa)
HnrnpuHeterogeneous nuclear ribonucleoprotein U; DNA- and RNA-binding protein involved in several cellular processes such as nuclear chromatin organization, telomere-length regulation, transcription, mRNA alternative splicing and stability, Xist-mediated transcriptional silencing and mitotic cell progression. Plays a role in the regulation of interphase large-scale gene-rich chromatin organization through chromatin-associated RNAs (caRNAs) in a transcription-dependent manner, and thereby maintains genomic stability. Required for the localization of the long non-coding Xist RNA on the inactiv [...] (803 aa)
Jarid2Jumonji and AT-rich interaction domain-containing 2. (1234 aa)
Rbm15RNA-binding motif protein 15. (962 aa)
Rlim-2Ring finger protein, LIM domain interacting. (603 aa)
CdylChromodomain Y-like protein; [Isoform 2]: Chromatin reader protein that recognizes and binds histone H3 trimethylated at 'Lys-9', dimethylated at 'Lys-27' and trimethylated at 'Lys-27' (H3K9me3, H3K27me2 and H3K27me3, respectively). Part of multimeric repressive chromatin complexes, where it is required for transmission and restoration of repressive histone marks, thereby preserving the epigenetic landscape. Required for chromatin targeting and maximal enzymatic activity of Polycomb repressive complex 2 (PRC2); acts as a positive regulator of PRC2 activity by bridging the pre-existing [...] (589 aa)
Eif1Eukaryotic translation initiation factor 1. (113 aa)
Prdm14PR/SET domain 14. (559 aa)
Lrif1Ligand-dependent nuclear receptor-interacting factor 1; Together with SMCHD1, involved in chromosome X inactivation in females by promoting the compaction of heterochromatin. Also able to repress the ligand-induced transcriptional activity of retinoic acid receptor alpha (RARA), possibly through direct recruitment of histone deacetylases; Belongs to the LRIF1 family. (749 aa)
Smchd1Structural maintenance of chromosomes flexible hinge domain-containing 1. (2006 aa)
Rbm15bRNA-binding motif protein 15B. (887 aa)
Mettl3Methyltransferase-like 3, isoform CRA_b; Belongs to the MT-A70-like family. (580 aa)
Exosc10RCG30986, isoform CRA_a. (885 aa)
RlimRing finger protein, LIM domain-interacting. (603 aa)
Ythdc1YTH domain-containing protein 1; Specifically recognizes and binds N6-methyladenosine (m6A)- containing RNAs, and acts as a regulator of alternative splicing. M6A is a modification present at internal sites of mRNAs and some non-coding RNAs and plays a role in the efficiency of mRNA splicing, processing and stability. Acts as a key regulator of exon-inclusion or exon-skipping during alternative splicing via interaction with mRNA splicing factors SRSF3 and SRSF10 (By similarity). Specifically binds m6A-containing mRNAs and promotes recruitment of SRSF3 to its mRNA-binding elements adjac [...] (738 aa)
Pcgf3Polycomb group ring finger 3. (241 aa)
Brca1Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...] (1817 aa)
Pcgf5Polycomb group ring finger 5. (253 aa)
Upf1UPF1, RNA helicase and ATPase. (1124 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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