STRINGSTRING
Nphp3 Nphp3 Itgb1 Itgb1 Has1 Has1 Pomt1 Pomt1 Adamts18 Adamts18 Tgfbi Tgfbi Col1a2 Col1a2 Ptx3 Ptx3 Egflam Egflam Adamts6 Adamts6 Impg1 Impg1 Col19a1 Col19a1 Col15a1 Col15a1 Spint1 Spint1 Postn Postn Mmp15 Mmp15 Csgalnact1 Csgalnact1 Adamts3 Adamts3 Vps33b Vps33b Col9a1 Col9a1 Ric8a Ric8a Olfml2a Olfml2a Col24a1 Col24a1 Ccn1 Ccn1 Fn1 Fn1 Ccn2 Ccn2 Col4a3 Col4a3 Loxl4 Loxl4 Kazald1 Kazald1 Scara3 Scara3 Fkbp10 Fkbp10 Gas2 Gas2 Mmp2 Mmp2 Itga8 Itga8 Adamts16 Adamts16 Fshr Fshr Lmx1b Lmx1b Serpinh1 Serpinh1 Plg Plg Mmp21 Mmp21 Mmp9 Mmp9 Gfod2 Gfod2 Ercc2 Ercc2 Apbb1 Apbb1 Ihh Ihh Gas6 Gas6 Vwa1 Vwa1 Agt Agt Tpsab1 Tpsab1 Klk5 Klk5 Klk4 Klk4 Mkx Mkx Hapln2 Hapln2 Adamts12 Adamts12 Bcl3 Bcl3 Nfkb2 Nfkb2 Dag1 Dag1 Adamts19 Adamts19 Colq Colq Exoc8 Exoc8 Col5a3 Col5a3 Spint2 Spint2 Tgfb1 Tgfb1 Pbxip1 Pbxip1 Ltbp3 Ltbp3 Aplp1 Aplp1 Ltbp4 Ltbp4 Kif9 Kif9 Ctss Ctss Fermt1 Fermt1 Adamtsl3 Adamtsl3 Scx Scx Col22a1 Col22a1 Smpd3 Smpd3 Adamtsl2 Adamtsl2 Slc39a8 Slc39a8 Ext1 Ext1 Mpzl3 Mpzl3 Mmp20 Mmp20 Loxl1 Loxl1 Gfap Gfap Tmem38b Tmem38b Noxo1 Noxo1 Rxfp1 Rxfp1 Hmcn1 Hmcn1 Hspg2 Hspg2 Mmp11 Mmp11 Grem1 Grem1 Mmp17 Mmp17 Mpv17 Mpv17 Otol1 Otol1 Anxa2 Anxa2 Col4a4 Col4a4 Mmp16 Mmp16 Tfap2a Tfap2a Itih1 Itih1 Adamts20 Adamts20 App App Dnajb6 Dnajb6 Col6a4 Col6a4 Acan Acan Ramp2 Ramp2 Adamts17 Adamts17 Nf1 Nf1 Col9a2 Col9a2 Nphs1 Nphs1 Abi3bp Abi3bp Col11a2 Col11a2 Col18a1 Col18a1 Impg2 Impg2 Fbln1 Fbln1 Col28a1 Col28a1 Ntng2 Ntng2 Eln Eln Loxl2 Loxl2 Atp7a Atp7a Vipas39 Vipas39 Col4a6 Col4a6 Cav1 Cav1 Washc1 Washc1 Myh11 Myh11 Loxl3 Loxl3 Col6a1 Col6a1 Plod3 Plod3 Mia Mia Col10a1 Col10a1 LOC103694874 LOC103694874 Mfap4 Mfap4 Tnf Tnf Npnt Npnt Spock2 Spock2 Myo1e Myo1e Cav2 Cav2 LOC103694864 LOC103694864 Adamts2 Adamts2 Mmp24 Mmp24 Has3 Has3 Ero1b Ero1b Vtn Vtn Ptk2 Ptk2 Hpn Hpn Egfl6 Egfl6 A0A1W2Q6M9_RAT A0A1W2Q6M9_RAT Ecm2 Ecm2 Ccdc80 Ccdc80 Adamts1 Adamts1 Ibsp Ibsp Dspp Dspp Pdgfra Pdgfra Tgfb2 Tgfb2 Nid1 Nid1 Sox9 Sox9 Lamc1 Lamc1 Serpinb5 Serpinb5 Ddr2 Ddr2 Olfml2b Olfml2b Serpinf2 Serpinf2 Fmod Fmod Adamts4 Adamts4 Flrt2 Flrt2 Col3a1 Col3a1 Prdx4 Prdx4 Col5a2 Col5a2 Col1a1 Col1a1 Sh3pxd2b Sh3pxd2b Lum Lum Vit Vit Myf5 Myf5 Has2 Has2 Fbln5 Fbln5 Adamts8 Adamts8 Adamts13 Adamts13 Creb3l1 Creb3l1 Smoc1 Smoc1 Lamb1 Lamb1 Lamb3 Lamb3 Sulf2 Sulf2 Elf3 Elf3 Mmp19 Mmp19 Ndnf Ndnf Ero1a Ero1a Tgfbr1 Tgfbr1 Fbln2 Fbln2 Col27a1 Col27a1 Emilin1 Emilin1 Tnfrsf11b Tnfrsf11b Mmp13 Mmp13 Mmp12 Mmp12 Mmp1b Mmp1b Mmp3 Mmp3 Col5a1 Col5a1 Sfrp2 Sfrp2 Papln Papln Hsd17b12 Hsd17b12 Col9a3 Col9a3 Nr2e1 Nr2e1 P4ha1 P4ha1 Sulf1 Sulf1 Adamtsl4 Adamtsl4 Wnt3a Wnt3a Col14a1 Col14a1 LOC103693323 LOC103693323 Adamts14 Adamts14 Col11a1 Col11a1 Mmp23 Mmp23 Cma1 Cma1 Qsox1 Qsox1 Ntng1 Ntng1 Adamts7 Adamts7 Col4a5 Col4a5 Mmp27 Mmp27 Dmp1 Dmp1 Col8a1 Col8a1 Serac1 Serac1 Idua Idua LOC103694380 LOC103694380 Dpt Dpt P3h4 P3h4 Optc Optc LOC102555086 LOC102555086 Adamts5 Adamts5 Ntn4 Ntn4 Col6a5 Col6a5 LOC100909752 LOC100909752 NEWGENE_621351 NEWGENE_621351 Mia3 Mia3 Pxdn Pxdn B4galt1 B4galt1 Pmp22 Pmp22 Lgals3 Lgals3 Matn3 Matn3 Wt1 Wt1 Crispld2 Crispld2 Foxf1 Foxf1 Nox1 Nox1 Eng Eng Comp Comp Aplp2 Aplp2 Col16a1 Col16a1 Tnr Tnr Mmp14 Mmp14 Lox Lox Foxc2 Foxc2 Lamb2 Lamb2 Crtap Crtap Reck Reck Gpm6b Gpm6b Col2a1 Col2a1 Lcp1 Lcp1 Flot1 Flot1 Smoc2 Smoc2 Cyp1b1 Cyp1b1 P3h1 P3h1 Adamts10 Adamts10 Col13a1 Col13a1 Efemp2 Efemp2 Col25a1 Col25a1 Wdr72 Wdr72 Col17a1 Col17a1 Ctsg Ctsg Atxn1l Atxn1l LOC102553715 LOC102553715 Col4a2 Col4a2 Col4a1 Col4a1 Adamts9 Adamts9 Col6a6 Col6a6 Mmp10 Mmp10 Smarca4 Smarca4 Adamts15 Adamts15 Vhl Vhl Mmp28 Mmp28 Mmp8 Mmp8 Mmp7 Mmp7 Col8a2 Col8a2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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gene neighborhood
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Nphp3Nephrocystin 3. (1325 aa)
Itgb1Integrin beta-1; Integrins alpha-1/beta-1, alpha-2/beta-1, alpha-10/beta-1 and alpha-11/beta-1 are receptors for collagen. Integrins alpha-1/beta-1 and alpha-2/beta-2 recognize the proline-hydroxylated sequence G-F-P-G- E-R in collagen. Integrins alpha-2/beta-1, alpha-3/beta-1, alpha- 4/beta-1, alpha-5/beta-1, alpha-8/beta-1, alpha-10/beta-1, alpha- 11/beta-1 and alpha-V/beta-1 are receptors for fibronectin. Alpha- 4/beta-1 recognizes one or more domains within the alternatively spliced CS-1 and CS-5 regions of fibronectin. Integrin alpha-5/beta-1 is a receptor for fibrinogen. Integrin [...] (798 aa)
Has1Hyaluronan synthase 1. (583 aa)
Pomt1Protein O-mannosyl-transferase 1; Transfers mannosyl residues to the hydroxyl group of serine or threonine residues. Coexpression of both POMT1 and POMT2 is necessary for enzyme activity, expression of either POMT1 or POMT2 alone is insufficient. Essentially dedicated to O-mannosylation of alpha-DAG1 and few other proteins but not of cadherins and protocaherins. (747 aa)
Adamts18ADAM metallopeptidase with thrombospondin type 1 motif, 18. (1054 aa)
TgfbiTransforming growth factor, beta-induced. (685 aa)
Col1a2Collagen alpha-2(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family. (1372 aa)
Ptx3Pentraxin 3. (381 aa)
EgflamPikachurin; Involved in both the normal retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness (By similarity). (1005 aa)
Adamts6ADAM metallopeptidase with thrombospondin type 1 motif, 6. (1117 aa)
Impg1Interphotoreceptor matrix proteoglycan 1; May interact with hyaluronan which may serve to form a basic macromolecular scaffold comprising the insoluble interphotoreceptor matrix. (797 aa)
Col19a1Collagen type XIX alpha 1 chain. (1129 aa)
Col15a1Collagen alpha-1(XV) chain-like. (1312 aa)
Spint1Serine peptidase inhibitor, Kunitz type 1. (507 aa)
PostnPeriostin, osteoblast specific factor (Predicted), isoform CRA_a. (810 aa)
Mmp15Matrix metallopeptidase 15. (657 aa)
Csgalnact1Hexosyltransferase. (530 aa)
Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3. (910 aa)
Vps33bVacuolar protein sorting-associated protein 33B; May play a role in vesicle-mediated protein trafficking to lysosomal compartments and in membrane docking/fusion reactions of late endosomes/lysosomes. Mediates phagolysosomal fusion in macrophages. Proposed to be involved in endosomal maturation implicating VIPAS39. In epithelial cells, the VPS33B:VIPAS39 complex may play a role in the apical recycling pathway and in the maintenance of the apical- basolateral polarity. Seems to be involved in the sorting of specific cargos from the trans-Golgi network to alpha-granule-destined multivesi [...] (617 aa)
Col9a1Collagen alpha-1(IX) chain; Structural component of hyaline cartilage and vitreous of the eye; Belongs to the fibril-associated collagens with interrupted helices (FACIT) family. (934 aa)
Ric8aSynembryn-A; Guanine nucleotide exchange factor (GEF), which can activate some, but not all, G-alpha proteins. Able to activate GNAI1, GNAO1 and GNAQ, but not GNAS by exchanging bound GDP for free GTP. Involved in regulation of microtubule pulling forces during mitotic movement of chromosomes by stimulating G(i)-alpha protein, possibly leading to release G(i)-alpha-GTP and NuMA proteins from the NuMA-GPSM2-G(i)- alpha-GDP complex. Also acts as an activator for G(q)-alpha (GNAQ) protein by enhancing the G(q)-coupled receptor-mediated ERK activation. (530 aa)
Olfml2aOlfactomedin-like 2A. (665 aa)
Col24a1Collagen type XXIV alpha 1 chain. (1352 aa)
Ccn1CCN family member 1; Promotes cell proliferation, chemotaxis, angiogenesis and cell adhesion. Appears to play a role in wound healing by up- regulating, in skin fibroblasts, the expression of a number of genes involved in angiogenesis, inflammation and matrix remodeling including VEGA-A, VEGA-C, MMP1, MMP3, TIMP1, uPA, PAI-1 and integrins alpha-3 and alpha-5 (By similarity). CCN1-mediated gene regulation is dependent on heparin-binding (By similarity). Down-regulates the expression of alpha-1 and alpha-2 subunits of collagen type-1 (By similarity). Promotes cell adhesion and adhesive s [...] (379 aa)
Fn1Fibronectin; Fibronectins bind cell surfaces and various compounds including collagen, fibrin, heparin, DNA, and actin. Fibronectins are involved in cell adhesion, cell motility, opsonization, wound healing, and maintenance of cell shape. Involved in osteoblast compaction through the fibronectin fibrillogenesis cell-mediated matrix assembly process, essential for osteoblast mineralization. Participates in the regulation of type I collagen deposition by osteoblasts (By similarity). (2477 aa)
Ccn2CCN family member 2; Major connective tissue mitoattractant secreted by vascular endothelial cells. Promotes proliferation and differentiation of chondrocytes (By similarity). Mediates heparin- and divalent cation- dependent cell adhesion in many cell types including fibroblasts, myofibroblasts, endothelial and epithelial cells (By similarity). Enhances fibroblast growth factor-induced DNA synthesis (By similarity); Belongs to the CCN family. (347 aa)
Col4a3Collagen type IV alpha 3 chain. (1671 aa)
Loxl4Lysyl oxidase-like 4 (Predicted). (758 aa)
Kazald1Kazal-type serine peptidase inhibitor domain 1. (304 aa)
Scara3Scavenger receptor class A, member 3 (Predicted). (606 aa)
Fkbp10Peptidylprolyl isomerase. (581 aa)
Gas2Similar to growth arrest-specific protein 2-mouse (Predicted), isoform CRA_b. (314 aa)
Mmp272 kDa type IV collagenase; Ubiquitinous metalloproteinase that is involved in diverse functions such as remodeling of the vasculature, angiogenesis, tissue repair, tumor invasion, inflammation, and atherosclerotic plaque rupture. As well as degrading extracellular matrix proteins, can also act on several nonmatrix proteins such as big endothelial 1 and beta- type CGRP promoting vasoconstriction. Also cleaves KISS at a Gly-|-Leu bond. Appears to have a role in myocardial cell death pathways. Contributes to myocardial oxidative stress by regulating the activity of GSK3beta. Cleaves GSK3 [...] (663 aa)
Itga8Integrin subunit alpha 8; Belongs to the integrin alpha chain family. (1062 aa)
Adamts16ADAM metallopeptidase with thrombospondin type 1 motif, 16. (1221 aa)
FshrFollicle-stimulating hormone receptor; G protein-coupled receptor for follitropin, the follicle- stimulating hormone. Through cAMP production activates the downstream PI3K-AKT and ERK1/ERK2 signaling pathways. (692 aa)
Lmx1bLIM homeobox transcription factor 1 beta. (395 aa)
Serpinh1Serpin H1; Binds specifically to collagen. Could be involved as a chaperone in the biosynthetic pathway of collagen. (417 aa)
PlgPlasmin heavy chain A, short form; Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invas [...] (812 aa)
Mmp21Matrix metalloproteinase 21 (Predicted). (568 aa)
Mmp9Matrix metalloproteinase-9; Could play a role in bone osteoclastic resorption. Cleaves type IV and type V collagen into large C-terminal three quarter fragments and shorter N-terminal one quarter fragments (By similarity). Belongs to the peptidase M10A family. (708 aa)
Gfod2Glucose-fructose oxidoreductase domain-containing 2. (385 aa)
Ercc2ERCC excision repair 2, TFIIH core complex helicase subunit. (760 aa)
Apbb1Amyloid-beta A4 precursor protein-binding family B member 1; Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain. Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis. May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1. Required for histone H4 acetylation at double-strand breaks (DSBs). Its ability to [...] (709 aa)
IhhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (411 aa)
Gas6Growth arrest-specific protein 6; Ligand for tyrosine-protein kinase receptors AXL, TYRO3 and MER whose signaling is implicated in cell growth and survival, cell adhesion and cell migration. GAS6/AXL signaling plays a role in various processes such as endothelial cell survival during acidification by preventing apoptosis, optimal cytokine signaling during human natural killer cell development, hepatic regeneration, gonadotropin-releasing hormone neuron survival and migration, platelet activation, or regulation of thrombotic responses (By similarity). (674 aa)
Vwa1Von Willebrand factor A domain-containing protein 1; Promotes matrix assembly. (415 aa)
AgtAngiotensin 1-4; Essential component of the renin-angiotensin system (RAS), a potent regulator of blood pressure, body fluid and electrolyte homeostasis. [Angiotensin-3]: stimulates aldosterone release. Belongs to the serpin family. (477 aa)
Tpsab1Tryptase; Tryptase is the major neutral protease present in mast cells and is secreted upon the coupled activation-degranulation response of this cell type. May play a role in innate immunity (By similarity). Belongs to the peptidase S1 family. Tryptase subfamily. (310 aa)
Klk5Kallikrein-related-peptidase 5; Belongs to the peptidase S1 family. (263 aa)
Klk4Kallikrein-related peptidase 4; Belongs to the peptidase S1 family. (256 aa)
MkxMohawk homeobox. (315 aa)
Hapln2Hyaluronan and proteoglycan link protein 2; Mediates a firm binding of versican V2 to hyaluronic acid. May play a pivotal role in the formation of the hyaluronan-associated matrix in the central nervous system (CNS) which facilitates neuronal conduction and general structural stabilization. Binds to hyaluronic acid (By similarity). (341 aa)
Adamts12ADAM metallopeptidase with thrombospondin type 1 motif, 12. (1599 aa)
Bcl3BCL3, transcription coactivator. (365 aa)
Nfkb2Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2, p49/p100, isoform CRA_a. (898 aa)
Dag1Dystroglycan 1. (893 aa)
Adamts19ADAM metallopeptidase with thrombospondin type 1 motif, 19. (825 aa)
ColqAcetylcholinesterase collagenic tail peptide; Anchors the catalytic subunits of asymmetric AChE to the synaptic basal lamina. (455 aa)
Exoc8Exocyst complex component 8; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (716 aa)
Col5a3Procollagen, type V, alpha 3, isoform CRA_b. (1737 aa)
Spint2Serine peptidase inhibitor, Kunitz type, 2. (250 aa)
Tgfb1Transforming growth factor beta-1 proprotein; Transforming growth factor beta-1 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-1 (TGF-beta-1) chains, which constitute the regulatory and active subunit of TGF-beta-1, respectively. Transforming growth factor beta-1: Multifunctional protein that regulates the growth and differentiation of various cell types and is involved in various processes, such as normal development, immune function, microglia function and responses to neurodegeneration (By similarity). Activation into mature form fo [...] (390 aa)
Pbxip1Pre-B-cell leukemia transcription factor-interacting protein 1; Regulator of pre-B-cell leukemia transcription factors (BPXs) function. Inhibits the binding of PBX1-HOX complex to DNA and blocks the transcriptional activity of E2A-PBX1. Tethers estrogen receptor- alpha (ESR1) to microtubules and allows them to influence estrogen receptors-alpha signaling (By similarity). (722 aa)
Ltbp3Latent-transforming growth factor beta-binding protein 3. (1253 aa)
Aplp1Amyloid beta precursor-like protein 1. (639 aa)
Ltbp4Latent-transforming growth factor beta-binding protein 4. (1631 aa)
Kif9Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (790 aa)
CtssCathepsin S; Thiol protease. Key protease responsible for the removal of the invariant chain from MHC class II molecules. The bond-specificity of this proteinase is in part similar to the specificities of cathepsin L (By similarity). May be involved in thyroid hormone biosynthesis. Belongs to the peptidase C1 family. (329 aa)
Fermt1Fermitin family member 1. (677 aa)
Adamtsl3ADAMTS-like 3. (1679 aa)
ScxScleraxis bHLH transcription factor. (209 aa)
Col22a1Collagen type XXII alpha 1 chain. (1613 aa)
Smpd3Sphingomyelin phosphodiesterase 3; Catalyzes the hydrolysis of sphingomyelin to form ceramide and phosphocholine. Ceramide mediates numerous cellular functions, such as apoptosis and growth arrest, and is capable of regulating these 2 cellular events independently. Also hydrolyzes sphingosylphosphocholine. Regulates the cell cycle by acting as a growth suppressor in confluent cells. Acts as a regulator of postnatal development and participates in bone and dentin mineralization. Overexpression enhances cell death, suggesting that it may be involved in apoptosis control. May be involved [...] (635 aa)
Adamtsl2ADAMTS-like 2. (957 aa)
Slc39a8Zinc transporter ZIP8; Acts as a manganese and zinc influx transporter. Plays a role in manganese reabsorption in the proximal tubule of the kidney and in manganese uptake into the brain; Belongs to the ZIP transporter (TC 2.A.5) family. (462 aa)
Ext1Exostosin glycosyltransferase 1; Belongs to the glycosyltransferase 47 family. (746 aa)
Mpzl3Similar to RIKEN cDNA A530065I17 gene (Predicted), isoform CRA_a. (236 aa)
Mmp20Matrix metalloproteinase 20 (Enamelysin) (Predicted). (482 aa)
Loxl1Lysyl oxidase-like 1. (608 aa)
GfapGlial fibrillary acidic protein; GFAP, a class-III intermediate filament, is a cell-specific marker that, during the development of the central nervous system, distinguishes astrocytes from other glial cells. (430 aa)
Tmem38bTrimeric intracellular cation channel type B; Monovalent cation channel required for maintenance of rapid intracellular calcium release. May act as a potassium counter-ion channel that functions in synchronization with calcium release from intracellular stores. (291 aa)
Noxo1NADPH oxidase organizer 1 (Predicted). (235 aa)
Rxfp1Relaxin receptor 1; Receptor for relaxins. The activity of this receptor is mediated by G proteins leading to stimulation of adenylate cyclase and an increase of cAMP. Binding of the ligand may also activate a tyrosine kinase pathway that inhibits the activity of a phosphodiesterase that degrades cAMP (By similarity); Belongs to the G-protein coupled receptor 1 family. (764 aa)
Hmcn1Hemicentin 1. (5635 aa)
Hspg2Uncharacterized protein. (2449 aa)
Mmp11Stromelysin-3; May play an important role in the progression of epithelial malignancies; Belongs to the peptidase M10A family. (491 aa)
Grem1Gremlin-1; Cytokine that may play an important role during carcinogenesis and metanephric kidney organogenesis, as a BMP antagonist required for early limb outgrowth and patterning in maintaining the FGF4-SHH feedback loop. Down-regulates the BMP4 signaling in a dose-dependent manner (By similarity). Antagonist of BMP2; inhibits BMP2-mediated differentiation of osteoblasts (in vitro) (By similarity). Acts as inhibitor of monocyte chemotaxis. Can inhibit the growth or viability of normal cells but not transformed cells when is overexpressed. (184 aa)
Mmp17Matrix metallopeptidase 17 (Predicted). (587 aa)
Mpv17Protein Mpv17; Non-selective channel that modulates the membrane potential under normal conditions and oxidative stress, and is involved in mitochondrial homeostasis. Involved in mitochondrial deoxynucleoside triphosphates (dNTP) pool homeostasis and mitochondrial DNA (mtDNA) maintenance (By similarity). May be involved in the regulation of reactive oxygen species metabolism and the control of oxidative phosphorylation (By similarity); Belongs to the peroxisomal membrane protein PXMP2/4 family. (169 aa)
Otol1Otolin 1. (482 aa)
Anxa2Annexin A2; Calcium-regulated membrane-binding protein whose affinity for calcium is greatly enhanced by anionic phospholipids. It binds two calcium ions with high affinity. May be involved in heat-stress response. Inhibits PCSK9-enhanced LDLR degradation, probably reduces PCSK9 protein levels via a translational mechanism but also competes with LDLR for binding with PCSK9. (339 aa)
Col4a4Collagen type IV alpha 4 chain. (159 aa)
Mmp16Matrix metalloproteinase-16; Endopeptidase that degrades various components of the extracellular matrix, such as collagen type III and fibronectin. Activates progelatinase A. Involved in the matrix remodeling of blood vessels. The short isoform efficiently converts progelatinase A to the intermediate form but not to the mature one. It has no effect on type I, II, IV and V collagen. However, upon interaction with CSPG4, it may be involved in degradation and invasion of type I collagen by melanoma cells. (546 aa)
Tfap2aTranscription factor AP-2-alpha; Sequence-specific DNA-binding protein that interacts with inducible viral and cellular enhancer elements to regulate transcription of selected genes. AP-2 factors bind to the consensus sequence 5'-GCCNNNGGC-3' and activate genes involved in a large spectrum of important biological functions including proper eye, face, body wall, limb and neural tube development. They also suppress a number of genes including MCAM/MUC18, C/EBP alpha and c-Myc. AP-2-alpha is the only AP-2 protein required for early morphogenesis of the lens vesicle. Together with the CITE [...] (431 aa)
Itih1Inter-alpha trypsin inhibitor, heavy chain 1 (Predicted), isoform CRA_a. (904 aa)
Adamts20ADAM metallopeptidase with thrombospondin type 1 motif, 20. (1909 aa)
AppGamma-secretase C-terminal fragment 50; Functions as a cell surface receptor and performs physiological functions on the surface of neurons relevant to neurite growth, neuronal adhesion and axonogenesis. Interaction between APP molecules on neighboring cells promotes synaptogenesis. Involved in cell mobility and transcription regulation through protein-protein interactions (By similarity). Can promote transcription activation through binding to APBB1-KAT5 and inhibit Notch signaling through interaction with Numb (By similarity). Couples to apoptosis-inducing pathways such as those medi [...] (770 aa)
Dnajb6DnaJ homolog subfamily B member 6; Plays an indispensable role in the organization of KRT8/KRT18 filaments. Acts as an endogenous molecular chaperone for neuronal proteins including huntingtin. Suppresses aggregation and toxicity of polyglutamine-containing, aggregation-prone proteins (By similarity). Has a stimulatory effect on the ATPase activity of HSP70 in a dose- dependent and time-dependent manner and hence acts as a co-chaperone of HSP70. Also reduces cellular toxicity and caspase-3 activity (By similarity). (357 aa)
Col6a4Collagen, type VI, alpha 4. (2113 aa)
AcanAggrecan core protein; This proteoglycan is a major component of extracellular matrix of cartilagenous tissues. A major function of this protein is to resist compression in cartilage. It binds avidly to hyaluronic acid via an N-terminal globular region. May play a regulatory role in the matrix assembly of the cartilage. (2162 aa)
Ramp2Receptor activity-modifying protein 2; Transports the calcitonin gene-related peptide type 1 receptor (CALCRL) to the plasma membrane. Acts as a receptor for adrenomedullin (AM) together with CALCRL. (182 aa)
Adamts17ADAM metallopeptidase with thrombospondin type 1 motif, 17. (1121 aa)
Nf1Neurofibromin; Stimulates the GTPase activity of Ras. NF1 shows greater affinity for Ras GAP, but lower specific activity. May be a regulator of Ras activity (By similarity). (2808 aa)
Col9a2Procollagen, type IX, alpha 2 (Predicted). (688 aa)
Nphs1Nephrin; Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion; Belongs to the immunoglobulin superfamily. (1252 aa)
Abi3bpABI family member 3-binding protein. (1148 aa)
Col11a2Procollagen, type XI, alpha 2 (Mapped). (1650 aa)
Col18a1Procollagen, type XVIII, alpha 1, isoform CRA_a. (1311 aa)
Impg2Interphotoreceptor matrix proteoglycan 2; Chondroitin sulfate- and hyaluronan-binding proteoglycan involved in the organization of interphotoreceptor matrix; may participate in the maturation and maintenance of the light-sensitive photoreceptor outer segment. Binds heparin. (1241 aa)
Fbln1Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (705 aa)
Col28a1Collagen type XXVIII alpha 1 chain. (1142 aa)
Ntng2Netrin G2 (Predicted), isoform CRA_a. (564 aa)
ElnElastin; Major structural protein of tissues such as aorta and nuchal ligament, which must expand rapidly and recover completely. Molecular determinant of the late arterial morphogenesis, stabilizing arterial structure by regulating proliferation and organization of vascular smooth muscle (By similarity). (875 aa)
Loxl2Lysyl oxidase homolog 2; Mediates the post-translational oxidative deamination of lysine residues on target proteins leading to the formation of deaminated lysine (allysine). Acts as a transcription corepressor and specifically mediates deamination of trimethylated 'Lys-4' of histone H3 (H3K4me3), a specific tag for epigenetic transcriptional activation. Shows no activity against histone H3 when it is trimethylated on 'Lys- 9' (H3K9me3) or 'Lys-27' (H3K27me3) or when 'Lys-4' is monomethylated (H3K4me1) or dimethylated (H3K4me2). Also mediates deamination of methylated TAF10, a member o [...] (710 aa)
Atp7aCopper-transporting ATPase 1; May supply copper to copper-requiring proteins within the secretory pathway, when localized in the trans-Golgi network. Under conditions of elevated extracellular copper, it relocalized to the plasma membrane where it functions in the efflux of copper from cells (By similarity). (1492 aa)
Vipas39Spermatogenesis-defective protein 39 homolog; Proposed to be involved in endosomal maturation implicating in part VPS33B. In epithelial cells, the VPS33B:VIPAS39 complex may play a role in the apical RAB11A-dependent recycling pathway and in the maintenance of the apical-basolateral polarity. May play a role in lysosomal trafficking, probably via association with the core HOPS complex in a discrete population of endosomes; the functions seems to be indepenedent of VPS33B. May play a role in vesicular trafficking during spermatogenesis. May be involved in direct or indirect transcriptio [...] (491 aa)
Col4a6Collagen type IV alpha 6 chain. (1638 aa)
Cav1Caveolin-1; May act as a scaffolding protein within caveolar membranes. Forms a stable heterooligomeric complex with CAV2 that targets to lipid rafts and drives caveolae formation. Mediates the recruitment of CAVIN proteins (CAVIN1/2/3/4) to the caveolae (By similarity). Interacts directly with G-protein alpha subunits and can functionally regulate their activity (By similarity). Involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Its binding to DPP4 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependen [...] (178 aa)
Washc1WASH complex subunit 1; Acts as a nucleation-promoting factor at the surface of endosomes, where it recruits and activates the Arp2/3 complex to induce actin polymerization, playing a key role in the fission of tubules that serve as transport intermediates during endosome sorting. Its assembly in the WASH core complex seems to inhibit its NPF activity and via WASHC2 is required for its membrane targeting. Regulates the trafficking of endosomal alpha5beta1 integrin to the plasma membrane and involved in invasive cell migration. In T-cells involved in endosome-to-membrane recycling of re [...] (442 aa)
Myh11Myosin-11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1979 aa)
Loxl3Lysyl oxidase-like 3 (Predicted), isoform CRA_a. (754 aa)
Col6a1Collagen type VI alpha 1 chain. (1025 aa)
Plod3Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3; Multifunctional enzyme that catalyzes a series of post- translational modifications on Lys residues in procollagen. Plays a redundant role in catalyzing the formation of hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens (By similarity). Plays a redundant role in catalyzing the transfer of galactose onto hydroxylysine groups, giving rise to galactosyl 5-hydroxylysine (By similarity). Has an essential role by catalyzing the subsequent transfer of glucose moieties, giving rise to 1,2-glucosylgalactosy [...] (741 aa)
MiaMelanoma-derived growth regulatory protein; May function during cartilage development and maintenance; Belongs to the MIA/OTOR family. (130 aa)
Col10a1Collagen type X alpha 1 chain. (680 aa)
LOC103694874Matrix metallopeptidase 11. (491 aa)
Mfap4Microfibril associated protein 4. (257 aa)
TnfTumor necrosis factor-like. (235 aa)
NpntNephronectin. (613 aa)
Spock2Sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2 (Predicted). (425 aa)
Myo1eUnconventional myosin-Ie; Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. Binds to membranes containing anionic phospholipids via its tail domain. Required for normal morphology of the glomerular basement membrane, normal development of foot processes by kidney podocytes and normal kidney function (By similarity). In dendritic cells, may control the movement of class II-containing cytoplasmic vesicles alon [...] (998 aa)
Cav2Caveolin-2; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity. Acts as an accessory protein in conjunction with CAV1 in targeting to lipid rafts and driving caveolae formation. The Ser-36 phosphorylated form has a role in modulating mitosis in endothelial cells. Positive regulator of cellular mitogenesis of the MAPK signaling pathway. Required for the insulin-stimulated nuclear translocation and activation of MAPK1 and STAT3, and the subsequent regulation of cell cycle progression. (162 aa)
LOC103694864Matrix metalloproteinase-28-like. (525 aa)
Adamts2ADAM metallopeptidase with thrombospondin type 1 motif, 2. (1170 aa)
Mmp24Processed matrix metalloproteinase-24; Metalloprotease that mediates cleavage of N-cadherin (CDH2) and acts as a regulator of neuro-immune interactions and neural stem cell quiescence. Involved in cell-cell interactions between nociceptive neurites and mast cells, possibly by mediating cleavage of CDH2, thereby acting as a mediator of peripheral thermal nociception and inflammatory hyperalgesia. Key regulator of neural stem cells quiescence by mediating cleavage of CDH2, affecting CDH2-mediated anchorage of neural stem cells to ependymocytes in the adult subependymal zone, leading to m [...] (589 aa)
Has3Hyaluronan synthase 3. (554 aa)
Ero1bEndoplasmic reticulum oxidoreductase 1 beta. (467 aa)
VtnVitronectin. (490 aa)
Ptk2Focal adhesion kinase 1; Non-receptor protein-tyrosine kinase that plays an essential role in regulating cell migration, adhesion, spreading, reorganization of the actin cytoskeleton, formation and disassembly of focal adhesions and cell protrusions, cell cycle progression, cell proliferation and apoptosis. Required for early embryonic development and placenta development. Required for embryonic angiogenesis, normal cardiomyocyte migration and proliferation, and normal heart development. Regulates axon growth and neuronal cell migration, axon branching and synapse formation; required f [...] (1067 aa)
HpnSerine protease hepsin non-catalytic chain; Serine protease that cleaves extracellular substrates, and contributes to the proteolytic processing of growth factors, such as HGF and MST1/HGFL. Plays a role in cell growth and maintenance of cell morphology. Plays a role in the proteolytic processing of ACE2. Mediates the proteolytic cleavage of urinary UMOD that is required for UMOD polymerization. (416 aa)
Egfl6EGF-like-domain, multiple 6. (551 aa)
A0A1W2Q6M9_RATUncharacterized protein. (1383 aa)
Ecm2Extracellular matrix protein 2-like. (606 aa)
Ccdc80Coiled-coil domain-containing protein 80; Promotes cell adhesion and matrix assembly; Belongs to the CCDC80 family. (949 aa)
Adamts1A disintegrin and metalloproteinase with thrombospondin motifs 1; Cleaves aggrecan, a cartilage proteoglycan, at the '1683- Glu-|-Leu-1684' site (within the chondroitin sulfate attachment domain), and may be involved in its turnover. Has angiogenic inhibitor activity (By similarity). Active metalloprotease, which may be associated with various inflammatory processes as well as development of cancer cachexia. May play a critical role in follicular rupture (By similarity). (967 aa)
IbspBone sialoprotein 2; Binds tightly to hydroxyapatite. Appears to form an integral part of the mineralized matrix. Probably important to cell-matrix interaction. Promotes Arg-Gly-Asp-dependent cell attachment. (319 aa)
DsppDentin sialophosphoprotein; DSP may be an important factor in dentinogenesis. DPP may bind high amount of calcium and facilitate initial mineralization of dentin matrix collagen as well as regulate the size and shape of the crystals. (952 aa)
PdgfraPlatelet-derived growth factor receptor alpha; Tyrosine-protein kinase that acts as a cell-surface receptor for PDGFA, PDGFB and PDGFC and plays an essential role in the regulation of embryonic development, cell proliferation, survival and chemotaxis. Depending on the context, promotes or inhibits cell proliferation and cell migration. Plays an important role in the differentiation of bone marrow-derived mesenchymal stem cells. Required for normal skeleton development and cephalic closure during embryonic development. Required for normal development of the mucosa lining the gastrointes [...] (1088 aa)
Tgfb2Transforming growth factor beta-2 proprotein; Transforming growth factor beta-2 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-2 (TGF-beta-2) chains, which constitute the regulatory and active subunit of TGF-beta-2, respectively. Transforming growth factor beta-2: Multifunctional protein that regulates various processes such as angiogenesis and heart development (By similarity). Activation into mature form follows different steps: following cleavage of the proprotein in the Golgi apparatus, Latency-associated peptide (LAP) and Transfor [...] (442 aa)
Nid1Nidogen-1; Sulfated glycoprotein widely distributed in basement membranes and tightly associated with laminin. Also binds to collagen IV and perlecan. It probably has a role in cell-extracellular matrix interactions. (1246 aa)
Sox9SRY-box transcription factor 9. (507 aa)
Lamc1Laminin subunit gamma 1. (1607 aa)
Serpinb5Serpin B5; Tumor suppressor. It blocks the growth, invasion, and metastatic properties of mammary tumors. As it does not undergo the S (stressed) to R (relaxed) conformational transition characteristic of active serpins, it exhibits no serine protease inhibitory activity (By similarity). (375 aa)
Ddr2Discoidin domain receptor tyrosine kinase 2. (936 aa)
Olfml2bOlfactomedin-like 2B (Predicted), isoform CRA_a. (746 aa)
Serpinf2Serpin family F member 2; Belongs to the serpin family. (554 aa)
FmodFibromodulin; Affects the rate of fibrils formation. May have a primary role in collagen fibrillogenesis (By similarity); Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class II subfamily. (376 aa)
Adamts4A disintegrin and metalloproteinase with thrombospondin motifs 4; Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May play an important role in the destruction of aggrecan in arthritic diseases. Cleaves aggrecan at the '392-Glu-|- Ala-393' site. (851 aa)
Flrt2Leucine-rich repeat transmembrane protein FLRT2; Functions in cell-cell adhesion, cell migration and axon guidance. Mediates cell-cell adhesion via its interactions with ADGRL3 and probably also other latrophilins that are expressed at the surface of adjacent cells. May play a role in the migration of cortical neurons during brain development via its interaction with UNC5D. Mediates axon growth cone collapse and plays a repulsive role in neuron guidance via its interaction with UNC5D, and possibly also other UNC-5 family members. Plays a role in fibroblast growth factor-mediated signal [...] (660 aa)
Col3a1Collagen alpha-1(III) chain; Collagen type III occurs in most soft connective tissues along with type I collagen. Involved in regulation of cortical development. Is the major ligand of ADGRG1 in the developing brain and binding to ADGRG1 inhibits neuronal migration and activates the RhoA pathway by coupling ADGRG1 to GNA13 and possibly GNA12 (By similarity). (1463 aa)
Prdx4Peroxiredoxin-4; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events. Regulates the activation of NF-kappa-B in the cytosol by a modulation of I-kappa-B-alpha phosphorylation. Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (273 aa)
Col5a2Collagen type V alpha 2 chain. (1494 aa)
Col1a1Collagen alpha-1(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family. (1453 aa)
Sh3pxd2bSH3 and PX domains 2B. (804 aa)
LumLumican; Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class II subfamily. (338 aa)
VitVitrin. (616 aa)
Myf5Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (255 aa)
Has2Hyaluronan synthase 2; Catalyzes the addition of GlcNAc or GlcUA monosaccharides to the nascent hyaluronan polymer. Therefore, it is essential to hyaluronan synthesis a major component of most extracellular matrices that has a structural role in tissues architectures and regulates cell adhesion, migration and differentiation. This is one of the isozymes catalyzing that reaction and it is particularly responsible for the synthesis of high molecular mass hyaluronan. Required for the transition of endocardial cushion cells into mesenchymal cells, a process crucial for heart development. M [...] (552 aa)
Fbln5Fibulin-5; Essential for elastic fiber formation, is involved in the assembly of continuous elastin (ELN) polymer and promotes the interaction of microfibrils and ELN. Stabilizes and organizes elastic fibers in the skin, lung and vasculature. Promotes adhesion of endothelial cells through interaction of integrins and the RGD motif. Vascular ligand for integrin receptors which may play a role in vascular development and remodeling. May act as an adapter that mediates the interaction between FBN1 and ELN. Belongs to the fibulin family. (448 aa)
Adamts8ADAM metallopeptidase with thrombospondin type 1 motif, 8. (788 aa)
Adamts13ADAM metallopeptidase with thrombospondin type 1 motif, 13. (1425 aa)
Creb3l1Processed cyclic AMP-responsive element-binding protein 3-like protein 1; Transcription factor involved in unfolded protein response (UPR). Binds the DNA consensus sequence 5'-GTGXGCXGC-3' (By similarity). In the absence of endoplasmic reticulum (ER) stress, inserted into ER membranes, with N-terminal DNA-binding and transcription activation domains oriented toward the cytosolic face of the membrane. In response to ER stress, transported to the Golgi, where it is cleaved in a site-specific manner by resident proteases S1P/MBTPS1 and S2P/MBTPS2. The released N-terminal cytosolic domain [...] (520 aa)
Smoc1SPARC-related modular calcium binding protein 1. (452 aa)
Lamb1Laminin subunit beta 1. (1786 aa)
Lamb3Laminin, beta 3, isoform CRA_a. (1172 aa)
Sulf2Extracellular sulfatase; Exhibits arylsulfatase activity and highly specific endoglucosamine-6-sulfatase activity. It can remove sulfate from the C- 6 position of glucosamine within specific subregions of intact heparin. Belongs to the sulfatase family. (875 aa)
Elf3ETS-related transcription factor Elf-3; Transcriptional activator that binds and transactivates ETS sequences containing the consensus nucleotide core sequence GGA[AT]. Acts synergistically with POU2F3 to transactivate the SPRR2A promoter and with RUNX1 to transactivate the ANGPT1 promoter. Also transactivates collagenase, CCL20, CLND7, FLG, KRT8, NOS2, PTGS2, SPRR2B, TGFBR2 and TGM3 promoters. Represses KRT4 promoter activity. Involved in mediating vascular inflammation. May play an important role in epithelial cell differentiation and tumorigenesis. May be a critical downstream effec [...] (395 aa)
Mmp19Matrix metalloproteinase 19 (Predicted). (517 aa)
NdnfUncharacterized protein. (496 aa)
Ero1aERO1-like protein alpha; Oxidoreductase involved in disulfide bond formation in the endoplasmic reticulum. Efficiently reoxidizes P4HB/PDI, the enzyme catalyzing protein disulfide formation, in order to allow P4HB to sustain additional rounds of disulfide formation. Following P4HB reoxidation, passes its electrons to molecular oxygen via FAD, leading to the production of reactive oxygen species (ROS) in the cell. Required for the proper folding of immunoglobulins (By similarity). Plays an important role in ER stress-induced, CHOP-dependent apoptosis by activating the inositol 1,4,5-tri [...] (464 aa)
Tgfbr1TGF-beta receptor type-1; Transmembrane serine/threonine kinase forming with the TGF- beta type II serine/threonine kinase receptor, TGFBR2, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinog [...] (497 aa)
Fbln2Fibulin 2, isoform CRA_a. (1221 aa)
Col27a1Collagen alpha-1(XXVII) chain; Plays a role during the calcification of cartilage and the transition of cartilage to bone. (1855 aa)
Emilin1Elastin microfibril interfacer 1 (Predicted), isoform CRA_b. (900 aa)
Tnfrsf11bTumor necrosis factor receptor superfamily member 11B; Acts as decoy receptor for TNFSF11/RANKL and thereby neutralizes its function in osteoclastogenesis. Inhibits the activation of osteoclasts and promotes osteoclast apoptosis in vitro. Bone homeostasis seems to depend on the local ratio between TNFSF11 and TNFRSF11B. May also play a role in preventing arterial calcification. May act as decoy receptor for TNFSF10/TRAIL and protect against apoptosis. TNFSF10/TRAIL binding blocks the inhibition of osteoclastogenesis (By similarity). (401 aa)
Mmp13Collagenase 3; Plays a role in the degradation of extracellular matrix proteins including fibrillar collagen, fibronectin, TNC and ACAN. Cleaves triple helical collagens, including type I, type II and type III collagen, but has the highest activity with soluble type II collagen. Can also degrade collagen type IV, type XIV and type X. May also function by activating or degrading key regulatory proteins, such as TGFB1 and CCN2. Plays a role in wound healing, tissue remodeling, cartilage degradation, bone development, bone mineralization and ossification. Required for normal embryonic bon [...] (472 aa)
Mmp12Macrophage metalloelastase; May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1' site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3 (By similarity). Belongs to the peptidase M10A family. (477 aa)
Mmp1bMatrix metallopeptidase 1b (interstitial collagenase). (409 aa)
Mmp3Stromelysin-1; Can degrade fibronectin, laminin, gelatins of type I, III, IV, and V; collagens III, IV, X, and IX, and cartilage proteoglycans. Activates procollagenase; Belongs to the peptidase M10A family. (473 aa)
Col5a1Collagen alpha-1(V) chain; Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin (By similarity). (1840 aa)
Sfrp2Secreted frizzled-related protein 2. (295 aa)
PaplnPapilin, proteoglycan-like sulfated glycoprotein. (1275 aa)
Hsd17b12Very-long-chain 3-oxoacyl-CoA reductase; Catalyzes the second of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of two carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme has a 3-ketoacyl-CoA reductase activity, reducing 3-ketoacyl-CoA to 3- hydroxyacyl-CoA, within each cycle of fatty acid elongation. Thereby, it may participate in the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membra [...] (312 aa)
Col9a3Collagen type IX alpha 3 chain. (680 aa)
Nr2e1Nuclear receptor subfamily 2, group E, member 1. (385 aa)
P4ha1Prolyl 4-hydroxylase subunit alpha-1; Catalyzes the post-translational formation of 4- hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins; Belongs to the P4HA family. (534 aa)
Sulf1Extracellular sulfatase Sulf-1; May be involved in the desulfation of sulfated glycosaminoglycans in the biosynthetic pathway and may play a role as an extracellular regulator of proteoglycan mediated signaling; Belongs to the sulfatase family. (870 aa)
Adamtsl4ADAMTS-like protein 4; Positive regulation of apoptosis. May facilitate FBN1 microfibril biogenesis (By similarity). (1030 aa)
Wnt3aProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (359 aa)
Col14a1Collagen type XIV alpha 1 chain. (1794 aa)
LOC103693323Collagen alpha-1(XXIII) chain. (532 aa)
Adamts14ADAM metallopeptidase with thrombospondin type 1 motif, 14. (1125 aa)
Col11a1Collagen alpha-1(XI) chain; May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils. (1804 aa)
Mmp23Matrix metalloproteinase-23, soluble form; Protease. May regulate the surface expression of some potassium channels by retaining them in the endoplasmic reticulum. Belongs to the peptidase M10A family. (391 aa)
Cma1Chymase; Major secreted protease of mast cells with suspected roles in vasoactive peptide generation, extracellular matrix degradation, and regulation of gland secretion; Belongs to the peptidase S1 family. Granzyme subfamily. (247 aa)
Qsox1Sulfhydryl oxidase 1; Catalyzes the oxidation of sulfhydryl groups in peptide and protein thiols to disulfides with the reduction of oxygen to hydrogen peroxide. Plays a role in disulfide bond formation in a variety of extracellular proteins. In fibroblasts, required for normal incorporation of laminin into the extracellular matrix, and thereby for normal cell-cell adhesion and cell migration (By similarity). (750 aa)
Ntng1Netrin G1. (463 aa)
Adamts7A disintegrin and metalloproteinase with thrombospondin motifs 7; Metalloprotease that may play a role in the degradation of COMP. (1808 aa)
Col4a5Collagen type IV alpha 5 chain. (1691 aa)
Mmp27Matrix metalloproteinase 27 (Predicted). (511 aa)
Dmp1Dentin matrix acidic phosphoprotein 1; May have a dual function during osteoblast differentiation. In the nucleus of undifferentiated osteoblasts, unphosphorylated form acts as a transcriptional component for activation of osteoblast- specific genes like osteocalcin. During the osteoblast to osteocyte transition phase it is phosphorylated and exported into the extracellular matrix, where it regulates nucleation of hydroxyapatite (By similarity). (489 aa)
Col8a1Collagen type VIII alpha 1 chain. (744 aa)
Serac1Serine active site-containing 1. (571 aa)
IduaAlpha-L-iduronidase. (643 aa)
LOC103694380Tumor necrosis factor, membrane form; Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. It is mainly secreted by macrophages and can induce cell death of certain tumor cell lines. It is potent pyrogen causing fever by direct action or by stimulation of interleukin-1 secretion and is implicated in the induction of cachexia, Under certain conditions it can stimulate cell proliferation and induce cell differentiation (By similarity). Induces insulin resistance in adipocytes via inhibition of insulin-induced IRS1 tyrosine phosphorylation and insulin-induced glucose uptake. Induces [...] (235 aa)
DptDermatopontin (Predicted), isoform CRA_a. (202 aa)
P3h4Endoplasmic reticulum protein SC65; Part of a complex composed of PLOD1, P3H3 and P3H4 that catalyzes hydroxylation of lysine residues in collagen alpha chains and is required for normal assembly and cross-linking of collagen fibrils. Required for normal bone density and normal skin stability via its role in hydroxylation of lysine residues in collagen alpha chains and in collagen fibril assembly; Belongs to the leprecan family. (443 aa)
OptcOpticin. (405 aa)
LOC102555086Similar to Cartilage-associated protein (Predicted), isoform CRA_b. (403 aa)
Adamts5ADAM metallopeptidase with thrombospondin type 1 motif, 5. (927 aa)
Ntn4Netrin 4. (631 aa)
Col6a5Collagen type VI alpha 5 chain. (2632 aa)
LOC100909752Procollagen, type XV, isoform CRA_a. (1345 aa)
NEWGENE_621351Collagen, type I, alpha 2. (1372 aa)
Mia3Uncharacterized protein. (1377 aa)
PxdnPeroxidasin. (1475 aa)
B4galt1UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1 (Mapped), isoform CRA_a. (399 aa)
Pmp22Peripheral myelin protein 22; Might be involved in growth regulation, and in myelinization in the peripheral nervous system. (160 aa)
Lgals3Galectin-3; Galactose-specific lectin which binds IgE. May mediate with the alpha-3, beta-1 integrin the stimulation by CSPG4 of endothelial cells migration. In the nucleus: acts as a pre-mRNA splicing factor. Involved in acute inflammatory responses including neutrophil activation and adhesion, chemoattraction of monocytes macrophages, opsonization of apoptotic neutrophils, and activation of mast cells. Together with TRIM16, coordinates the recognition of membrane damage with mobilization of the core autophagy regulators ATG16L1 and BECN1 in response to damaged endomembranes (By simil [...] (265 aa)
Matn3Matrilin 3. (463 aa)
Wt1Wilms tumor protein homolog; Transcription factor that plays an important role in cellular development and cell survival. Recognizes and binds to the DNA sequence 5'-GCG(T/G)GGGCG-3'. Regulates the expression of numerous target genes, including EPO. Plays an essential role for development of the urogenital system. It has a tumor suppressor as well as an oncogenic role in tumor formation. Function may be isoform-specific: isoforms lacking the KTS motif may act as transcription factors. Isoforms containing the KTS motif may bind mRNA and play a role in mRNA metabolism or splicing. Isofor [...] (448 aa)
Crispld2Cysteine-rich secretory protein LCCL domain-containing 2. (497 aa)
Foxf1Forkhead box F1. (378 aa)
Nox1NADPH oxidase 1; Pyridine nucleotide-dependent oxidoreductase that generates superoxide and might conduct H(+) ions as part of its electron transport mechanism. (563 aa)
EngEndoglin. (699 aa)
CompCartilage oligomeric matrix protein; May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BI [...] (755 aa)
Aplp2Amyloid-like protein 2; May play a role in the regulation of hemostasis. The soluble form may have inhibitory properties towards coagulation factors. May interact with cellular G-protein signaling pathways. May bind to the DNA 5'-GTCACATG-3'(CDEI box). Inhibits trypsin, chymotrypsin, plasmin, factor XIA and plasma and glandular kallikrein. Modulates the Cu/Zn nitric oxide-catalyzed autodegradation of GPC1 heparan sulfate side chains in fibroblasts (By similarity); Belongs to the APP family. (718 aa)
Col16a1Collagen type XVI alpha 1 chain. (1618 aa)
TnrTenascin-R; Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. Theses interactions can influence cellular behavior by either evoking a stable adhesion and differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation. Interaction with CNTN1 induces a repul [...] (1358 aa)
Mmp14Matrix metalloproteinase-14; Endopeptidase that degrades various components of the extracellular matrix such as collagen. Activates progelatinase A. Essential for pericellular collagenolysis and modeling of skeletal and extraskeletal connective tissues during development. May be involved in actin cytoskeleton reorganization by cleaving PTK7. Acts as a positive regulator of cell growth and migration via activation of MMP15 in association with pro-MMP2. Involved in the formation of the fibrovascular tissues in association with pro-MMP2. Cleaves ADGRB1 to release vasculostatin-40 which in [...] (582 aa)
LoxProtein-lysine 6-oxidase, short form; Responsible for the post-translational oxidative deamination of peptidyl lysine residues in precursors to fibrous collagen and elastin. Regulator of Ras expression. May play a role in tumor suppression. Plays a role in the aortic wall architecture (By similarity); Belongs to the lysyl oxidase family. (411 aa)
Foxc2Forkhead box protein C2; Transcriptional activator. Might be involved in the formation of special mesenchymal tissues (By similarity). (494 aa)
Lamb2Laminin subunit beta-2; Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. (1801 aa)
CrtapSimilar to Cartilage-associated protein (Predicted), isoform CRA_a. (209 aa)
ReckReversion-inducing-cysteine-rich protein with kazal motifs. (972 aa)
Gpm6bNeuronal membrane glycoprotein M6-b; May be involved in neural development. Involved in regulation of osteoblast function and bone formation. Involved in matrix vesicle release by osteoblasts; this function seems to involve maintenance of the actin cytoskeleton. May be involved in cellular trafficking of SERT and thereby in regulation of serotonin uptake; Belongs to the myelin proteolipid protein family. (291 aa)
Col2a1Collagen alpha-1(II) chain; Type II collagen is specific for cartilaginous tissues. It is essential for the normal embryonic development of the skeleton, for linear growth and for the ability of cartilage to resist compressive forces. (1419 aa)
Lcp1Lymphocyte cytosolic protein 1. (645 aa)
Flot1Flotillin-1; May act as a scaffolding protein within caveolar membranes, functionally participating in formation of caveolae or caveolae-like vesicles. (428 aa)
Smoc2SPARC-related modular calcium-binding 2. (457 aa)
Cyp1b1Cytochrome P450 1B1; A cytochrome P450 monooxygenase involved in the metabolism of various endogenous substrates, including fatty acids, steroid hormones and vitamins (By similarity). Mechanistically, uses molecular oxygen inserting one oxygen atom into a substrate, and reducing the second into a water molecule, with two electrons provided by NADPH via cytochrome P450 reductase (NADPH--hemoprotein reductase) (By similarity). Exhibits catalytic activity for the formation of hydroxyestrogens from 17beta-estradiol (E2), namely 2- and 4-hydroxy E2. Metabolizes testosterone and progesterone [...] (541 aa)
P3h1Prolyl 3-hydroxylase 1; Basement membrane-associated chondroitin sulfate proteoglycan (CSPG). Has prolyl 3-hydroxylase activity catalyzing the post- translational formation of 3-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens, especially types IV and V. May be involved in the secretory pathway of cells. Has growth suppressive activity in fibroblasts (By similarity). (739 aa)
Adamts10ADAM metallopeptidase with thrombospondin type 1 motif, 10. (1104 aa)
Col13a1Similar to alpha 1 type XIII collagen isoform 17, isoform CRA_a. (739 aa)
Efemp2EGF-containing fibulin extracellular matrix protein 2. (443 aa)
Col25a1Collagen type XXV alpha 1 chain. (503 aa)
Wdr72WD repeat domain 72. (925 aa)
Col17a1Collagen type XVII alpha 1 chain. (1465 aa)
CtsgCathepsin G. (250 aa)
Atxn1lAlanine and glycine-rich protein-like. (679 aa)
LOC102553715Microfibril-associated glycoprotein 4-like. (257 aa)
Col4a2Collagen type IV alpha 2 chain. (1645 aa)
Col4a1Collagen type IV alpha 1 chain. (1669 aa)
Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 9. (1880 aa)
Col6a6Collagen type VI alpha 6 chain. (2264 aa)
Mmp10Stromelysin-2; Can degrade fibronectin, gelatins of type I, III, IV, and V; weakly collagens III, IV, and V. Activates procollagenase; Belongs to the peptidase M10A family. (476 aa)
Smarca4Transcription activator BRG1; Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating the calcium- dependent release of a repressor complex and the recruitment of an activator complex. In resting ne [...] (1613 aa)
Adamts15ADAM metallopeptidase with thrombospondin type 1 motif, 15. (950 aa)
VhlVon Hippel-Lindau disease tumor suppressor; Involved in the ubiquitination and subsequent proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Seems to act as a target recruitment subunit in the E3 ubiquitin ligase complex and recruits hydroxylated hypoxia-inducible factor (HIF) under normoxic conditions. Involved in transcriptional repression through interaction with HIF1A, HIF1AN and histone deacetylases. Ubiquitinates, in an oxygen-responsive manner, ADRB2 (By similarity). (185 aa)
Mmp28Matrix metalloproteinase-28-like. (525 aa)
Mmp8Neutrophil collagenase; Can degrade fibrillar type I, II, and III collagens. (466 aa)
Mmp7Matrilysin; Degrades casein, gelatins of types I, III, IV, and V, and fibronectin. Activates procollagenase (By similarity); Belongs to the peptidase M10A family. (267 aa)
Col8a2Collagen type VIII alpha 2 chain. (699 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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