STRINGSTRING
Hoxc4 Hoxc4 Alx4 Alx4 Pbx2 Pbx2 Pou1f1 Pou1f1 Gsx1 Gsx1 Uncx Uncx Lhx5 Lhx5 Hoxd1 Hoxd1 Hoxd4 Hoxd4 Hoxd10 Hoxd10 Hoxd13 Hoxd13 Evx2 Evx2 Barhl2 Barhl2 Nkx6-1 Nkx6-1 Gsx2 Gsx2 Hlx Hlx Pou3f4 Pou3f4 Lhx1 Lhx1 Cdx4 Cdx4 Mixl1 Mixl1 Prop1 Prop1 Prrx1 Prrx1 Dlx3 Dlx3 Dlx4 Dlx4 Alx1 Alx1 Lmx1a Lmx1a Tlx3 Tlx3 Hoxa1 Hoxa1 Hoxa2 Hoxa2 Hoxa3 Hoxa3 LOC103692127 LOC103692127 Meox2 Meox2 Lhx6 Lhx6 En2 En2 Pou3f2 Pou3f2 Dbx2 Dbx2 Lhx8 Lhx8 Hoxb13 Hoxb13 Hoxb9 Hoxb9 Hoxb8 Hoxb8 LOC100909443 LOC100909443 Hoxb6 Hoxb6 Pax4 Pax4 Hoxb5 Hoxb5 Hoxb4 Hoxb4 Hoxb3 Hoxb3 Hoxb2 Hoxb2 Barx2 Barx2 Hoxb1 Hoxb1 Nkx2-1 Nkx2-1 Nkx2-8 Nkx2-8 Zfhx4 Zfhx4 Vax1 Vax1 Pou2f3 Pou2f3 Hmx1 Hmx1 Emx2 Emx2 Otp Otp Gsc Gsc Lhx9 Lhx9 Lhx2 Lhx2 Irx6 Irx6 Dlx5 Dlx5 Irx5 Irx5 Pitx1 Pitx1 Irx3 Irx3 Vsx2 Vsx2 Pou4f2 Pou4f2 Shox2 Shox2 Nkx2-4 Nkx2-4 Irx4 Irx4 Irx2 Irx2 Isl1 Isl1 Nkx2-2 Nkx2-2 Barhl1 Barhl1 Gbx1 Gbx1 Vax2 Vax2 Pax3 Pax3 Crx Crx Hesx1 Hesx1 Zfhx3 Zfhx3 Dbx1 Dbx1 Nkx3-1 Nkx3-1 Emx1 Emx1 Isl2 Isl2 Hoxc12 Hoxc12 Hoxc11 Hoxc11 Hoxc10 Hoxc10 Tlx1 Tlx1 Lbx1 Lbx1 Hoxc9 Hoxc9 Hoxc6 Hoxc6 Hoxc5 Hoxc5 Rax Rax Barx1 Barx1 Nkx1-2 Nkx1-2 Lmx1b Lmx1b Nkx6-3 Nkx6-3 Alx3 Alx3 Msx2 Msx2 Pou4f3 Pou4f3 Pax7 Pax7 Mkx Mkx Pitx3 Pitx3 Gbx2 Gbx2 Phox2a Phox2a Drgx Drgx Hmx3 Hmx3 Hmx2 Hmx2 Nkx2-5 Nkx2-5 Meox1 Meox1 Zfhx2 Zfhx2 Pbx3 Pbx3 Bsx Bsx Hoxb7 Hoxb7 Hoxc13 Hoxc13 Nkx2-6 Nkx2-6 Hoxd3 Hoxd3 Rhox13 Rhox13 Hoxc8 Hoxc8 Hoxa4 Hoxa4 Six1 Six1 Hoxa10 Hoxa10 Irx1 Irx1 Obox2 Obox2 Lhx3 Lhx3 Pou2f1 Pou2f1 Cdx2 Cdx2 Pitx2 Pitx2 Gsc2 Gsc2 LOC100361016 LOC100361016 Six4 Six4 Nkx2-3 Nkx2-3 Nkx6-2 Nkx6-2 Dmbx1 Dmbx1 Cux1 Cux1 Isx Isx Vsx1 Vsx1 Hoxd9 Hoxd9 Hoxd12 Hoxd12 Lhx4 Lhx4 Nanog Nanog Evx1 Evx1 LOC103692128 LOC103692128 Nkx1-1 Nkx1-1 Mnx1 Mnx1 Pou5f1 Pou5f1 Hoxa7-2 Hoxa7-2 M0R8Z6_RAT M0R8Z6_RAT Pdx1 Pdx1 Msx3 Msx3 En1 En1 Tlx2-2 Tlx2-2 LOC100909604 LOC100909604 Prrx2 Prrx2 Phox2b Phox2b Pax6 Pax6 Nkx3-2 Nkx3-2 Cdx1 Cdx1 Otx1 Otx1 Pou2f2 Pou2f2 Pou3f3 Pou3f3 Six5 Six5 Pou4f1 Pou4f1 LOC691325 LOC691325 Arx Arx LOC100911668-2 LOC100911668-2
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Hoxc4Homeobox protein Hox-C4; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. (264 aa)
Alx4Aristaless 4 (Predicted). (399 aa)
Pbx2Pre-B-cell leukemia transcription factor 2. (430 aa)
Pou1f1Pituitary-specific positive transcription factor 1; Transcription factor involved in the specification of the lactotrope, somatotrope, and thyrotrope phenotypes in the developing anterior pituitary. Activates growth hormone and prolactin genes. Specifically binds to the consensus sequence 5'-TAAAT-3'. Belongs to the POU transcription factor family. Class-1 subfamily. (291 aa)
Gsx1Genomic screened homeo box 1 (Predicted). (261 aa)
UncxHomeobox protein unc-4 homolog; Transcription factor involved in somitogenesis and neurogenesis. Required for the maintenance and differentiation of particular elements of the axial skeleton. May act upstream of PAX9. Plays a role in controlling the development of connections of hypothalamic neurons to pituitary elements, allowing central neurons to reach the peripheral blood circulation and to deliver hormones for control of peripheral functions (By similarity). (530 aa)
Lhx5LIM/homeobox protein Lhx5; Plays an essential role in the regulation of neuronal differentiation and migration during development of the central nervous system. (402 aa)
Hoxd1Homeo box D1 (Predicted). (328 aa)
Hoxd4Homeo box D4 (Predicted), isoform CRA_a. (251 aa)
Hoxd10Homeo box D10. (410 aa)
Hoxd13Homeo box D13 (Predicted). (331 aa)
Evx2Even-skipped homeobox 2. (373 aa)
Barhl2BarH-like 2 homeobox protein; Potential regulator of neural basic helix-loop-helix genes. It may down-regulate expression of ASCL1 and, within the thalamus, up- regulate NGN2, thereby regulating distinct patterns of neuronal differentiation; Belongs to the BAR homeobox family. (384 aa)
Nkx6-1Homeobox protein Nkx-6.1; Transcription factor which binds to specific A/T-rich DNA sequences in the promoter regions of a number of genes. Involved in the development of insulin-producing beta cells in the islets of Langerhans at the secondary transition (By similarity). Together with NKX2-2 and IRX3 acts to restrict the generation of motor neurons to the appropriate region of the neural tube. Belongs to the class II proteins of neuronal progenitor factors, which are induced by SHH signals (By similarity). (365 aa)
Gsx2Genomic screened homeo box 2 protein. (305 aa)
HlxH2.0-like homeobox protein; Transcription factor required for TBX21/T-bet-dependent maturation of Th1 cells as well as maintenance of Th1-specific gene expression. Involved in embryogenesis and hematopoiesis (By similarity); Belongs to the H2.0 homeobox family. (476 aa)
Pou3f4POU domain, class 3, transcription factor 4; Probable transcription factor which exert its primary action widely during early neural development and in a very limited set of neurons in the mature brain; Belongs to the POU transcription factor family. Class-3 subfamily. (361 aa)
Lhx1LIM/homeobox protein Lhx1; Potential transcription factor. May play a role in early mesoderm formation and later in lateral mesoderm differentiation and neurogenesis (By similarity). (406 aa)
Cdx4Caudal type homeo box 4 (Predicted). (288 aa)
Mixl1Mix paired-like homeobox 1. (231 aa)
Prop1PROP paired-like homeobox 1. (223 aa)
Prrx1Paired mesoderm homeobox protein 1; Acts as a transcriptional regulator of muscle creatine kinase (MCK) and so has a role in the establishment of diverse mesodermal muscle types. The protein binds to an A/T-rich element in the muscle creatine enhancer (By similarity). (245 aa)
Dlx3Distal-less homeobox 3 (Predicted). (287 aa)
Dlx4Distal-less homeobox 4 (Predicted). (238 aa)
Alx1ALX homeobox protein 1; Sequence-specific DNA-binding transcription factor that binds palindromic sequences within promoters and may activate or repress the transcription of a subset of genes. Most probably regulates the expression of genes involved in the development of mesenchyme-derived craniofacial structures (By similarity). Early on in development, it plays a role in forebrain mesenchyme survival (By similarity). May also induce epithelial to mesenchymal transition (EMT) through the expression of SNAI1 (By similarity). Belongs to the paired homeobox family. (326 aa)
Lmx1aLIM homeobox transcription factor 1 alpha. (382 aa)
Tlx3Similar to HOX11L2 (Predicted), isoform CRA_a. (291 aa)
Hoxa1Homeobox protein Hox-A1; Sequence-specific transcription factor (By similarity). Regulates multiple developmental processes including brainstem, inner and outer ear, abducens nerve and cardiovascular development and morphogenesis as well as cognition and behavior (By similarity). Also part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Acts on the anterior body structures. Seems to act in the maintenance and/or generation of hindbrain segments (By similarity). Activates transcription in the presence of PBX1A [...] (334 aa)
Hoxa2Homeobox protein Hox-A2; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. Proboscipedia subfamily. (372 aa)
Hoxa3Homeobox protein Hox-A3. (444 aa)
LOC103692127Homeobox protein Hox-A5; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Also binds to its own promoter. Binds specifically to the motif 5'-CYYNATTA[TG]Y-3' (By similarity); Belongs to the Antp homeobox family. (270 aa)
Meox2Homeobox protein MOX-2; Mesodermal transcription factor that plays a key role in somitogenesis and is required for sclerotome development. Activates expression of CDKN1A and CDKN2A in endothelial cells, acting as a regulator of vascular cell proliferation. While it activates CDKN1A in a DNA-dependent manner, it activates CDKN2A in a DNA-independent manner. May have a regulatory role when quiescent vascular smooth muscle cells reenter the cell cycle. (303 aa)
Lhx6LIM homeobox 6. (392 aa)
En2Homeobox protein engrailed-like. (323 aa)
Pou3f2POU domain, class 3, transcription factor 2; Transcription factor that plays a key role in neuronal differentiation (By similarity). Binds preferentially to the recognition sequence which consists of two distinct half-sites, ('GCAT') and ('TAAT'), separated by a non-conserved spacer region of 0, 2, or 3 nucleotides. The combination of three transcription factors, ASCL1, POU3F2/BRN2 and MYT1L, is sufficient to reprogram fibroblasts and other somatic cells into induced neuronal (iN) cells in vitro (By similarity). Acts downstream of ASCL1, accessing chromatin that has been opened by ASCL [...] (445 aa)
Dbx2Developing brain homeobox 2. (377 aa)
Lhx8LIM homeobox 8. (336 aa)
Hoxb13Homeo box B13 (Predicted). (286 aa)
Hoxb9Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (250 aa)
Hoxb8Homeobox protein Hox-B8; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. (243 aa)
LOC100909443Homeobox A11. (313 aa)
Hoxb6Similar to homeotic protein Hox 2.2-mouse (Predicted). (224 aa)
Pax4Paired box protein Pax-4; Plays an important role in the differentiation and development of pancreatic islet beta cells. Transcriptional repressor that competes with PAX6 in binding to a common element in the glucagon, insulin and somatostatin promoters (By similarity); Belongs to the paired homeobox family. (349 aa)
Hoxb5Similar to homeotic protein Hox B5-mouse (Predicted). (269 aa)
Hoxb4Similar to homeotic protein Hox B4-mouse (Predicted). (250 aa)
Hoxb3Hoxb3 protein. (428 aa)
Hoxb2Homeo box B2 (Predicted). (355 aa)
Barx2BARX homeobox 2. (290 aa)
Hoxb1Homeo box B1 (Predicted), isoform CRA_a. (297 aa)
Nkx2-1Homeobox protein Nkx-2.1; Transcription factor that binds and activates the promoter of thyroid specific genes such as thyroglobulin, thyroperoxidase, and thyrotropin receptor. Crucial in the maintenance of the thyroid differentiation phenotype. May play a role in lung development and surfactant homeostasis. Forms a regulatory loop with GRHL2 that coordinates lung epithelial cell morphogenesis and differentiation (By similarity). Activates the transcription of GNRHR and plays a role in enhancing the circadian oscillation of its gene expression. Represses the transcription of the circad [...] (372 aa)
Nkx2-8NK2 transcription factor related, locus 9 (Drosophila) (Predicted). (234 aa)
Zfhx4Zinc finger homeobox 4. (3593 aa)
Vax1Ventral anterior homeobox 1; Transcription factor that may function in dorsoventral specification of the forebrain. Required for axon guidance and major tract formation in the developing forebrain. May contribute to the differentiation of the neuroretina, pigmented epithelium and optic stalk (By similarity); Belongs to the EMX homeobox family. (336 aa)
Pou2f3POU domain, class 2, transcription factor 3; Transcription factor that binds to the octamer motif (5'- ATTTGCAT-3'). Activates cytokeratin 10 (K10) gene expression. May serve a regulatory function with respect to epidermal development. Isoform 2 inhibits transactivation by OCT-1; Belongs to the POU transcription factor family. Class-2 subfamily. (430 aa)
Hmx1H6 homeo box 1 (Predicted), isoform CRA_b. (333 aa)
Emx2Similar to empty spiracles-like protein 2 (Predicted), isoform CRA_a. (253 aa)
OtpOrthopedia homolog (Drosophila), isoform CRA_a. (325 aa)
GscGoosecoid homeobox. (256 aa)
Lhx9LIM/homeobox protein Lhx9; Involved in gonadal development. (388 aa)
Lhx2LIM/homeobox protein Lhx2; Acts as a transcriptional activator. Stimulates the promoter of the alpha-glycoprotein gene. Transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types (By similarity). (427 aa)
Irx6Similar to iroquois homeobox protein 6 (Predicted). (443 aa)
Dlx5Homeobox protein DLX-5; Transcriptional factor involved in bone development. Acts as an immediate early BMP-responsive transcriptional activator essential for osteoblast differentiation. Stimulates ALPL promoter activity in a RUNX2-independent manner during osteoblast differentiation. Stimulates SP7 promoter activity during osteoblast differentiation. Promotes cell proliferation by up-regulating MYC promoter activity. Involved as a positive regulator of both chondrogenesis and chondrocyte hypertrophy in the endochondral skeleton. Binds to the homeodomain-response element of the ALPL an [...] (289 aa)
Irx5Iroquois homeobox protein 5. (484 aa)
Pitx1Pituitary homeobox 1; Sequence-specific transcription factor that binds gene promoters and activates their transcription. May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb. (315 aa)
Irx3Iroquois related homeobox 3 (Drosophila) (Predicted), isoform CRA_b. (326 aa)
Vsx2Ceh-10 homeo domain containing homolog (C. elegans), isoform CRA_a. (361 aa)
Pou4f2POU domain, class 4, transcription factor 2; Tissue-specific DNA-binding transcription factor involved in the development and differentiation of target cells. Functions either as activator or repressor modulating the rate of target gene transcription through RNA polymerase II enzyme in a promoter-dependent manner. Binds to the consensus octamer motif 5'-AT[A/T]A[T/A]T[A/T]A-3' of promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Binds to an octamer site to form a ternary complex with ISL1; cooper [...] (412 aa)
Shox2Short stature homeobox protein 2; May be a growth regulator and have a role in specifying neural systems involved in processing somatosensory information, as well as in face and body structure formation. (233 aa)
Nkx2-4NK2 homeobox 4. (353 aa)
Irx4Iroquois related homeobox 4 (Drosophila) (Predicted). (515 aa)
Irx2Iroquois homeobox 2. (474 aa)
Isl1Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1 (By similarity). Binds to insulin gene enhancer sequence [...] (349 aa)
Nkx2-2NK2 homeobox 2. (273 aa)
Barhl1BarH-like 1 homeobox protein. (327 aa)
Gbx1Gastrulation brain homeobox 1. (425 aa)
Vax2Ventral anterior homeobox 2; Transcription factor that may function in dorsoventral specification of the forebrain. Regulates the expression of Wnt signaling antagonists including the expression of a truncated TCF7L2 isoform that cannot bind CTNNB1 and acts therefore as a potent dominant-negative Wnt antagonist. Plays a crucial role in eye development and, in particular, in the specification of the ventral optic vesicle (By similarity). May be a regulator of axial polarization in the retina; Belongs to the EMX homeobox family. (292 aa)
Pax3Paired box 3. (484 aa)
CrxCone-rod homeobox protein. (299 aa)
Hesx1Similar to anterior-restricted homeobox protein (Predicted). (185 aa)
Zfhx3Zinc finger homeobox 3. (3730 aa)
Dbx1Homeobox protein DBX1; Could have a role in patterning the central nervous system during embryogenesis. Has a key role in regulating the distinct phenotypic features that distinguish two major classes of ventral interneurons, V0 and V1 neurons. Regulates the transcription factor profile, neurotransmitter phenotype, intraspinal migratory path and axonal trajectory of V0 neurons, features that differentiate them from an adjacent set of V1 neurons (By similarity). (335 aa)
Nkx3-1NK-3 transcription factor, locus 1 (Drosophila). (238 aa)
Emx1Similar to empty spiracles homolog 1 (Predicted). (290 aa)
Isl2Insulin gene enhancer protein ISL-2; Transcriptional factor that defines subclasses of motoneurons that segregate into columns in the spinal cord and select distinct axon pathways. (359 aa)
Hoxc12Homeo box C12 (Predicted). (280 aa)
Hoxc11Homeobox C11. (304 aa)
Hoxc10Homeo box C10, isoform CRA_b. (342 aa)
Tlx1Similar to transcription factor (Predicted). (333 aa)
Lbx1Transcription factor LBX1; Transcription factor required for the development of GABAergic interneurons in the dorsal horn of the spinal cord and migration and further development of hypaxial muscle precursor cells for limb muscles, diaphragm and hypoglossal cord. (285 aa)
Hoxc9Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (260 aa)
Hoxc6Homeo box C6. (235 aa)
Hoxc5Homeo box C5 (Predicted). (222 aa)
RaxRetinal homeobox protein Rx; Plays a critical role in eye formation by regulating the initial specification of retinal cells and/or their subsequent proliferation. Binds to the photoreceptor conserved element-I (PCE- 1/Ret 1) in the photoreceptor cell-specific arrestin promoter (By similarity). (342 aa)
Barx1BarH-like homeobox 1 (Predicted). (254 aa)
Nkx1-2RCG47496, isoform CRA_a. (305 aa)
Lmx1bLIM homeobox transcription factor 1 beta. (395 aa)
Nkx6-3NK6 homeobox 3. (262 aa)
Alx3ALX homeobox 3. (254 aa)
Msx2Homeobox protein MSX-2; Acts as a transcriptional regulator in bone development. Represses the ALPL promoter activity and antagonizes the stimulatory effect of DLX5 on ALPL expression during osteoblast differentiation. Probable morphogenetic role. May play a role in limb-pattern formation. In osteoblasts, suppresses transcription driven by the osteocalcin FGF response element (OCFRE). Binds to the homeodomain-response element of the ALPL promoter (By similarity). (267 aa)
Pou4f3POU domain, class 4, transcription factor 3; Acts as a transcriptional activator. Acts by binding to sequences related to the consensus octamer motif 5'-ATGCAAAT-3' in the regulatory regions of its target genes. Involved in the auditory system development, required for terminal differentiation of hair cells in the inner ear. (338 aa)
Pax7Paired box 7. (503 aa)
MkxMohawk homeobox. (315 aa)
Pitx3Pituitary homeobox 3; Transcriptional regulator which is important for the differentiation and maintenance of meso-diencephalic dopaminergic (mdDA) neurons during development. In addition to its importance during development, it also has roles in the long-term survival and maintenance of the mdDA neurons. Activates NR4A2/NURR1-mediated transcription of genes such as SLC6A3, SLC18A2, TH and DRD2 which are essential for development of mdDA neurons. Acts by decreasing the interaction of NR4A2/NURR1 with the corepressor NCOR2/SMRT which acts through histone deacetylases (HDACs) to keep pro [...] (302 aa)
Gbx2Gastrulation brain homeobox 2. (348 aa)
Phox2aPaired mesoderm homeobox protein 2A; May be involved in regulating the specificity of expression of the catecholamine biosynthetic genes. Acts as a transcription activator/factor. Could maintain the noradrenergic phenotype; Belongs to the paired homeobox family. (279 aa)
DrgxDorsal root ganglia homeobox protein; Transcription factor required for the formation of correct projections from nociceptive sensory neurons to the dorsal horn of the spinal cord and normal perception of pain. (263 aa)
Hmx3Similar to homeodomain protein (Predicted). (356 aa)
Hmx2Similar to Hmx2 protein (Predicted), isoform CRA_b. (273 aa)
Nkx2-5Homeobox protein Nkx-2.5; Implicated in commitment to and/or differentiation of the myocardial lineage. Acts as a transcriptional activator of ANF in cooperation with GATA4. Binds to the core DNA motif of NPPA promoter. It is transcriptionally controlled by PBX1 and acts as a transcriptional repressor of CDKN2B. It is required for spleen development; Belongs to the NK-2 homeobox family. (319 aa)
Meox1Mesenchyme homeobox 1 (Predicted). (253 aa)
Zfhx2Zinc finger homeobox 2. (2558 aa)
Pbx3Pre B-cell leukemia transcription factor 3 (Predicted). (434 aa)
BsxBrain-specific homeobox. (232 aa)
Hoxb7Homeobox protein Hox-B7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. (219 aa)
Hoxc13Homeobox C13. (328 aa)
Nkx2-6NK2 homeobox 6. (213 aa)
Hoxd3Homeobox protein Hox-D3; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. (432 aa)
Rhox13Rhox homeobox family member 13. (233 aa)
Hoxc8Homeobox protein Hox-C8; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. (242 aa)
Hoxa4Homeobox protein Hox-A4. (285 aa)
Six1Sine oculis homeobox homolog 1 (Drosophila). (284 aa)
Hoxa10Homeobox A10. (413 aa)
Irx1Iroquois homeobox 1. (480 aa)
Obox2Oocyte-specific homeobox 2. (311 aa)
Lhx3RCG45383, isoform CRA_b. (402 aa)
Pou2f1POU domain, class 2, transcription factor 1; Transcription factor that binds to the octamer motif (5'- ATTTGCAT-3') and activates the promoters of the genes for some small nuclear RNAs (snRNA) and of genes such as those for histone H2B and immunoglobulins. Modulates transcription transactivation by NR3C1, AR and PGR (By similarity). (768 aa)
Cdx2Caudal type homeo box 2. (310 aa)
Pitx2Pituitary homeobox 2; Controls cell proliferation in a tissue-specific manner and is involved in morphogenesis. During embryonic development, exerts a role in the expansion of muscle progenitors. May play a role in the proper localization of asymmetric organs such as the heart and stomach (By similarity). (324 aa)
Gsc2Goosecoid-like (Predicted). (214 aa)
LOC100361016Oocyte-specific homeobox 5-like. (288 aa)
Six4Sine oculis-related homeobox 4 homolog (Drosophila) (Predicted). (705 aa)
Nkx2-3NK2 transcription factor related, locus 3 (Drosophila) (Predicted). (362 aa)
Nkx6-2NK6 transcription factor related, locus 2 (Drosophila) (Predicted). (277 aa)
Dmbx1Diencephalon/mesencephalon homeobox 1 (Predicted), isoform CRA_a. (376 aa)
Cux1Homeobox protein cut-like 1; Probably has a broad role in mammalian development as a repressor of developmentally regulated gene expression. May act by preventing binding of positively-activing CCAAT factors to promoters. Component of nf-munr repressor; binds to the matrix attachment regions (MARs) (5' and 3') of the immunoglobulin heavy chain enhancer. Represses T-cell receptor (TCR) beta enhancer function by binding to MARbeta, an ATC-rich DNA sequence located upstream of the TCR beta enhancer (By similarity). Binds to the TH enhancer; may require the basic helix-loop-helix protein T [...] (1504 aa)
IsxIntestine-specific homeobox. (242 aa)
Vsx1Visual system homeobox 1. (369 aa)
Hoxd9Homeobox protein Hox-D9; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Abd-B homeobox family. (332 aa)
Hoxd12Homeo box D12. (268 aa)
Lhx4LIM homeobox 4. (389 aa)
NanogNanog homeobox. (312 aa)
Evx1Even-skipped homeobox 1. (407 aa)
LOC103692128Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (271 aa)
Nkx1-1NK1 homeobox 1. (443 aa)
Mnx1Motor neuron and pancreas homeobox 1. (402 aa)
Pou5f1POU domain protein. (352 aa)
Hoxa7-2Homeobox protein Hox-A7; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. (229 aa)
M0R8Z6_RATHomeobox domain-containing protein. (275 aa)
Pdx1Pancreas/duodenum homeobox protein 1; Activates insulin and somatostatin gene transcription. Key regulator of islet peptide hormone expression but also responsible for the development of the pancreas, most probably by determining maturation and differentiation of common pancreatic precursor cells in the developing gut. As part of a PDX1:PBX1b:MEIS2b complex in pancreatic acinar cells is involved in the transcriptional activation of the ELA1 enhancer; the complex binds to the enhancer B element and cooperates with the transcription factor 1 complex (PTF1) bound to the enhancer A element [...] (283 aa)
Msx3RCG48500, isoform CRA_b. (204 aa)
En1Homeobox protein engrailed-like. (399 aa)
Tlx2-2T-cell leukemia homeobox 2. (284 aa)
LOC100909604Homeobox protein Hox-A6-like. (233 aa)
Prrx2Paired-related homeobox 2. (247 aa)
Phox2bPaired-like homeobox 2b. (307 aa)
Pax6Paired box protein Pax-6; Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells. Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters (By similarity). Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains; Belongs to the paired homeobox family. (433 aa)
Nkx3-2NK3 homeobox 2. (320 aa)
Cdx1Homeobox protein CDX-1; Plays a role in transcriptional regulation. Involved in activated KRAS-mediated transcriptional activation of PRKD1 in colorectal cancer (CRC) cells. Binds to the PRKD1 promoter in colorectal cancer (CRC) cells. Could play a role in the terminal differentiation of the intestine. Binds preferentially to methylated DNA. (271 aa)
Otx1Homeobox protein OTX1; Probably plays a role in the development of the brain and the sense organs. Can bind to the BCD target sequence (BTS): 5'-TCTAATCCC- 3' (By similarity). May play a role in the specification or differentiation of neurons in the deep layers of the cerebral cortex, and also in cerebellar regionalization during early development. Belongs to the paired homeobox family. Bicoid subfamily. (324 aa)
Pou2f2POU domain protein. (479 aa)
Pou3f3POU domain, class 3, transcription factor 3; Transcription factor that acts synergistically with SOX11 and SOX4. Plays a role in neuronal development. Is implicated in an enhancer activity at the embryonic met-mesencephalic junction; the enhancer element contains the octamer motif (5'-ATTTGCAT-3') (By similarity). (487 aa)
Six5SIX homeobox 5. (720 aa)
Pou4f1POU domain, class 4, transcription factor 1; Multifunctional transcription factor with different regions mediating its different effects. Acts by binding (via its C-terminal domain) to sequences related to the consensus octamer motif 5'-ATGCAAAT-3' in the regulatory regions of its target genes. Regulates the expression of specific genes involved in differentiation and survival within a subset of neuronal lineages. It has been shown that activation of some of these genes requires its N- terminal domain, maybe through a neuronal-specific cofactor. Ativates BCL2 expression and protects ne [...] (417 aa)
LOC691325Homeobox domain-containing protein. (344 aa)
ArxHomeobox protein ARX; Transcription factor required for normal brain development. May be important for maintenance of specific neuronal subtypes in the cerebral cortex and axonal guidance in the floor plate (By similarity). Belongs to the paired homeobox family. Bicoid subfamily. (565 aa)
LOC100911668-2Homeobox A10. (94 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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