STRINGSTRING
Hoxa5 Hoxa5 Ctnnb1 Ctnnb1 Gdf5 Gdf5 Pax1 Pax1 Tbx15 Tbx15 Hoxd12 Hoxd12 Fgfr1 Fgfr1 Pbx1 Pbx1 Pbx3 Pbx3 Esr1 Esr1 Alx3 Alx3 Fgf8 Fgf8 Lmx1b Lmx1b Hoxc6 Hoxc6 Hoxc10 Hoxc10 Gli3 Gli3 Pax3 Pax3 Isl1 Isl1 Fgf10 Fgf10 Pitx1 Pitx1 Sox10 Sox10 Bmp5 Bmp5 Twist1 Twist1 Emx2 Emx2 Hoxb5 Hoxb5 Gdf6 Gdf6 Msx1 Msx1 LOC103692127 LOC103692127 Myf6 Myf6 Myf5 Myf5 Pbx2 Pbx2 Tbx5 Tbx5 Sox9 Sox9 Tbx4 Tbx4 Alx1 Alx1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Hoxa5Homeobox protein Hox-A5. (270 aa)
Ctnnb1Catenin beta-1; Key downstream component of the canonical Wnt signaling pathway. In the absence of Wnt, forms a complex with AXIN1, AXIN2, APC, CSNK1A1 and GSK3B that promotes phosphorylation on N-terminal Ser and Thr residues and ubiquitination of CTNNB1 via BTRC and its subsequent degradation by the proteasome. In the presence of Wnt ligand, CTNNB1 is not ubiquitinated and accumulates in the nucleus, where it acts as a coactivator for transcription factors of the TCF/LEF family, leading to activate Wnt responsive genes. Involved in the regulation of cell adhesion, as component of an [...] (781 aa)
Gdf5Growth differentiation factor 5. (495 aa)
Pax1Paired box gene 1 (Mapped). (191 aa)
Tbx15T-box transcription factor 15. (602 aa)
Hoxd12Homeo box D12. (268 aa)
Fgfr1Fibroblast growth factor receptor 1; Tyrosine-protein kinase that acts as cell-surface receptor for fibroblast growth factors and plays an essential role in the regulation of embryonic development, cell proliferation, differentiation and migration. Required for normal mesoderm patterning and correct axial organization during embryonic development, normal skeletogenesis and normal development of the gonadotropin-releasing hormone (GnRH) neuronal system. Phosphorylates PLCG1, FRS2, GAB1 and SHB. Ligand binding leads to the activation of several signaling cascades. Activation of PLCG1 lea [...] (729 aa)
Pbx1PBX homeobox 1. (342 aa)
Pbx3Pre B-cell leukemia transcription factor 3 (Predicted). (434 aa)
Esr1Estrogen receptor; Nuclear hormone receptor. The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. Ligand-dependent nuclear transactivation involves either direct homodimer binding to a palindromic estrogen response element (ERE) sequence or association with other DNA-binding transcription factors, such as AP-1/c-Jun, c-Fos, ATF-2, Sp1 and Sp3, to mediate ERE- independent signaling. Ligand binding induces a conformational change allowing subsequent or combinatorial a [...] (600 aa)
Alx3ALX homeobox 3. (254 aa)
Fgf8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (204 aa)
Lmx1bLIM homeobox transcription factor 1 beta. (395 aa)
Hoxc6Homeo box C6. (235 aa)
Hoxc10Homeo box C10, isoform CRA_b. (342 aa)
Gli3GLI family zinc finger 3. (1582 aa)
Pax3Paired box 3. (484 aa)
Isl1Insulin gene enhancer protein ISL-1; DNA-binding transcriptional activator. Recognizes and binds to the consensus octamer binding site 5'-ATAATTAA-3' in promoter of target genes. Plays a fundamental role in the gene regulatory network essential for retinal ganglion cell (RGC) differentiation. Cooperates with the transcription factor POU4F2 to achieve maximal levels of expression of RGC target genes and RGC fate specification in the developing retina. Involved in the specification of motor neurons in cooperation with LHX3 and LDB1 (By similarity). Binds to insulin gene enhancer sequence [...] (349 aa)
Fgf10Fibroblast growth factor 10; Plays an important role in the regulation of embryonic development, cell proliferation and cell differentiation. Required for normal branching morphogenesis. May play a role in wound healing; Belongs to the heparin-binding growth factors family. (215 aa)
Pitx1Pituitary homeobox 1; Sequence-specific transcription factor that binds gene promoters and activates their transcription. May play a role in the development of anterior structures, and in particular, the brain and facies and in specifying the identity or structure of hindlimb. (315 aa)
Sox10Transcription factor SOX-10; Transcription factor that plays a central role in developing and mature glia. Specifically activates expression of myelin genes, during oligodendrocyte (OL) maturation, such as DUSP15 and MYRF, thereby playing a central role in oligodendrocyte maturation and CNS myelination. Once induced, MYRF cooperates with SOX10 to implement the myelination program. Transcriptional activator of MITF, acting synergistically with PAX3 (By similarity). (466 aa)
Bmp5Bone morphogenetic protein 5. (302 aa)
Twist1Twist family bHLH transcription factor 1. (203 aa)
Emx2Similar to empty spiracles-like protein 2 (Predicted), isoform CRA_a. (253 aa)
Hoxb5Similar to homeotic protein Hox B5-mouse (Predicted). (269 aa)
Gdf6Growth/differentiation factor 6; Growth factor that controls proliferation and cellular differentiation in the retina and bone formation. Plays a key role in regulating apoptosis during retinal development. Establishes dorsal- ventral positional information in the retina and controls the formation of the retinotectal map. Required for normal formation of bones and joints in the limbs, skull, digits and axial skeleton. Plays a key role in establishing boundaries between skeletal elements during development. Regulation of GDF6 expression seems to be a mechanism for evolving species-speci [...] (452 aa)
Msx1Msh homeobox 1. (297 aa)
LOC103692127Homeobox protein Hox-A5; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Also binds to its own promoter. Binds specifically to the motif 5'-CYYNATTA[TG]Y-3' (By similarity); Belongs to the Antp homeobox family. (270 aa)
Myf6Myogenic factor 6; Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein. May play a role in controlling terminal differentiation events. (242 aa)
Myf5Myogenic factor; Induces fibroblasts to differentiate into myoblasts. Acts as a transcriptional activator that promotes transcription of muscle- specific target genes and plays a role in muscle differentiation. (255 aa)
Pbx2Pre-B-cell leukemia transcription factor 2. (430 aa)
Tbx5T-box transcription factor TBX5; DNA-binding protein that regulates the transcription of several genes and is involved in heart development and limb pattern formation. Binds to the core DNA motif of NPPA promoter. (517 aa)
Sox9SRY-box transcription factor 9. (507 aa)
Tbx4T-box transcription factor 4. (554 aa)
Alx1ALX homeobox protein 1; Sequence-specific DNA-binding transcription factor that binds palindromic sequences within promoters and may activate or repress the transcription of a subset of genes. Most probably regulates the expression of genes involved in the development of mesenchyme-derived craniofacial structures (By similarity). Early on in development, it plays a role in forebrain mesenchyme survival (By similarity). May also induce epithelial to mesenchymal transition (EMT) through the expression of SNAI1 (By similarity). Belongs to the paired homeobox family. (326 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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