STRINGSTRING
RGD1564447 RGD1564447 Ccm2 Ccm2 Pxdn Pxdn Adamts5 Adamts5 M0RBX6_RAT M0RBX6_RAT Eng Eng H3c1 H3c1 Snai2 Snai2 Mst1r Mst1r H3f3c H3f3c Adamts9 Adamts9 LOC684762 LOC684762 Gapdh Gapdh Tek Tek Rdx Rdx Stk24 Stk24 Krit1 Krit1 Notch1 Notch1 Stk25 Stk25 Klf4 Klf4 Klf2 Klf2 Bmp6 Bmp6 Cdh5 Cdh5 Bmp4 Bmp4 Stk26 Stk26 Adamts4 Adamts4 LOC100361558 LOC100361558 RGD1564548 RGD1564548
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RGD1564447Histone H3; Belongs to the histone H3 family. (136 aa)
Ccm2CCM2 scaffold protein. (453 aa)
PxdnPeroxidasin. (1475 aa)
Adamts5ADAM metallopeptidase with thrombospondin type 1 motif, 5. (927 aa)
M0RBX6_RATHistone H3; Belongs to the histone H3 family. (136 aa)
EngEndoglin. (699 aa)
H3c1Histone H3.1; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (136 aa)
Snai2Zinc finger protein SNAI2; Transcriptional repressor that modulates both activator- dependent and basal transcription. Involved in the generation and migration of neural crest cells. Plays a role in mediating RAF1-induced transcriptional repression of the TJ protein, occludin (OCLN) and subsequent oncogenic transformation of epithelial cells. Represses BRCA2 expression by binding to its E2-box-containing silencer and recruiting CTBP1 and HDAC1 in breast cells. In epidermal keratinocytes, binds to the E-box in ITGA3 promoter and represses its transcription. Involved in the regulation of [...] (268 aa)
Mst1rMacrophage-stimulating 1 receptor. (1372 aa)
H3f3cHistone H3; Belongs to the histone H3 family. (136 aa)
Adamts9ADAM metallopeptidase with thrombospondin type 1 motif, 9. (1880 aa)
LOC684762Histone H3; Belongs to the histone H3 family. (136 aa)
GapdhGlyceraldehyde-3-phosphate dehydrogenase; Has both glyceraldehyde-3-phosphate dehydrogenase and nitrosylase activities, thereby playing a role in glycolysis and nuclear functions, respectively. Glyceraldehyde-3-phosphate dehydrogenase is a key enzyme in glycolysis that catalyzes the first step of the pathway by converting D-glyceraldehyde 3-phosphate (G3P) into 3-phospho-D-glyceroyl phosphate. Modulates the organization and assembly of the cytoskeleton. Facilitates the CHP1-dependent microtubule and membrane associations through its ability to stimulate the binding of CHP1 to microtubu [...] (333 aa)
TekEndothelial-specific receptor tyrosine kinase. (1120 aa)
RdxRadixin. (583 aa)
Stk24Serine/threonine-protein kinase 24 12 kDa subunit; Serine/threonine-protein kinase that acts on both serine and threonine residues and promotes apoptosis in response to stress stimuli and caspase activation. Mediates oxidative-stress-induced cell death by modulating phosphorylation of JNK1-JNK2 (MAPK8 and MAPK9), p38 (MAPK11, MAPK12, MAPK13 and MAPK14) during oxidative stress. Plays a role in a staurosporine-induced caspase-independent apoptotic pathway by regulating the nuclear translocation of AIFM1 and ENDOG and the DNase activity associated with ENDOG. Phosphorylates STK38L on 'Thr [...] (419 aa)
Krit1KRIT1, ankyrin repeat-containing. (736 aa)
Notch1Neurogenic locus notch homolog protein 1; Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination (By similarity). Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus (By similarity). Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). Involved in angiogenesis; negatively regulates endothelial cell proliferation and mig [...] (2531 aa)
Stk25Serine/threonine kinase 25 (STE20 homolog, yeast), isoform CRA_a. (426 aa)
Klf4Kruppel-like factor 4 (Gut), isoform CRA_a. (482 aa)
Klf2Krueppel-like factor 2; Transcription factor that binds to the CACCC box in the promoter of target genes such as HBB/beta globin or NOV and activates their transcription. Might be involved in transcriptional regulation by modulating the binding of the RARA nuclear receptor to RARE DNA elements (By similarity). (351 aa)
Bmp6Bone morphogenetic protein 6; Induces cartilage and bone formation. (506 aa)
Cdh5Cadherin 5; Cadherins are calcium-dependent cell adhesion proteins. (776 aa)
Bmp4Bone morphogenetic protein 4; Induces cartilage and bone formation. Acts in concert with PTHLH/PTHRP to stimulate ductal outgrowth during embryonic mammary development and to inhibit hair follicle induction (By similarity). (408 aa)
Stk26Serine/threonine kinase 26. (416 aa)
Adamts4A disintegrin and metalloproteinase with thrombospondin motifs 4; Cleaves aggrecan, a cartilage proteoglycan, and may be involved in its turnover. May play an important role in the destruction of aggrecan in arthritic diseases. Cleaves aggrecan at the '392-Glu-|- Ala-393' site. (851 aa)
LOC100361558Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...] (136 aa)
RGD1564548Similar to H3 histone, family 3B. (136 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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