STRINGSTRING
Rpl10a Rpl10a Rplp0 Rplp0 Rpl24 Rpl24 Srp72 Srp72 Srp9 Srp9 Rpl23 Rpl23 Rps29 Rps29 Rpl19 Rpl19 Rpl7 Rpl7 Srp14 Srp14 LOC100911372 LOC100911372 Rpl15 Rpl15 Rpl4 Rpl4 Rpl32 Rpl32 Rpl29 Rpl29 Rpl22 Rpl22 Rpl22l1 Rpl22l1 Rps3a Rps3a Rplp1 Rplp1 Rpl35 Rpl35 Rpl27a Rpl27a Rpl3l Rpl3l Rpl13 Rpl13 Rps12 Rps12 Rps23 Rps23 Rps27 Rps27 Rpl38-ps3 Rpl38-ps3 Rps3 Rps3 Rpsa Rpsa Rpl18a Rpl18a Rps5 Rps5 Rps16 Rps16 Uba52 Uba52 Rps19 Rps19 Srp19 Srp19 Rpl13a Rpl13a Rpl27 Rpl27 Rpl18 Rpl18 Srp68 Srp68 Rpl31 Rpl31 Rps25 Rps25 Rps15 Rps15 Rpl5 Rpl5 Rps13 Rps13 Rpl6 Rpl6 LOC100911575 LOC100911575 LOC100360781 LOC100360781 Rpl17-2 Rpl17-2 Rpl39l Rpl39l Rpl10l Rpl10l LOC103690821 LOC103690821 LOC102555453 LOC102555453 LOC100360449 LOC100360449 D4A771_RAT D4A771_RAT RGD1566373 RGD1566373 Rps21-2 Rps21-2 RGD1564606 RGD1564606 Rps10l1 Rps10l1 Rps4x Rps4x D3ZZ95_RAT D3ZZ95_RAT D4AD70_RAT D4AD70_RAT D3ZPN7_RAT D3ZPN7_RAT LOC100360117 LOC100360117 D4A6B9_RAT D4A6B9_RAT Rps18l1 Rps18l1 Rpl36al Rpl36al D3ZDE0_RAT D3ZDE0_RAT LOC100363469 LOC100363469 Srp54a Srp54a Rpl31l4 Rpl31l4 Rps4y2 Rps4y2 Rpl6-ps1 Rpl6-ps1 D3ZJD3_RAT D3ZJD3_RAT Rpl30 Rpl30 D4A4W9_RAT D4A4W9_RAT Rpl28 Rpl28 Rps14 Rps14 rCG_34378 rCG_34378 D4A1Z2_RAT D4A1Z2_RAT Rpl36 Rpl36 Rps28 Rps28 Rpl3 Rpl3 Rps11 Rps11 RGD1561635 RGD1561635 RGD1564617 RGD1564617 LOC100359951 LOC100359951 Rpl10 Rpl10 Rps27l Rps27l Rpl12-ps1 Rpl12-ps1 Rpl26 Rpl26 Rpl11 Rpl11 Rpl14 Rpl14 Ubc Ubc Rps8 Rps8 Rps9 Rps9 Rps15a Rps15a Rps7 Rps7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rpl10a60S ribosomal protein L10a; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL1 family. (217 aa)
Rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (317 aa)
Rpl2460S ribosomal protein L24; Belongs to the eukaryotic ribosomal protein eL24 family. (156 aa)
Srp72Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family. (670 aa)
Srp9Signal recognition particle 9 kDa protein; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding. (86 aa)
Rpl2360S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (140 aa)
Rps2940S ribosomal protein S29. (56 aa)
Rpl1960S ribosomal protein L19. (196 aa)
Rpl760S ribosomal protein L7; Component of the large ribosomal subunit (By similarity). Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs (By similarity); Belongs to the universal ribosomal protein uL30 family. (260 aa)
Srp14Signal recognition particle 14. (110 aa)
LOC10091137240S ribosomal protein S6; May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA. (247 aa)
Rpl1560S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
Rpl460S ribosomal protein L4; Belongs to the universal ribosomal protein uL4 family. (421 aa)
Rpl3260S ribosomal protein L32; Belongs to the eukaryotic ribosomal protein eL32 family. (135 aa)
Rpl2960S ribosomal protein L29; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL29 family. (156 aa)
Rpl2260S ribosomal protein L22. (128 aa)
Rpl22l1Ribosomal protein L22-like 1. (122 aa)
Rps3a40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3. (264 aa)
Rplp160S acidic ribosomal protein P1; Plays an important role in the elongation step of protein synthesis; Belongs to the eukaryotic ribosomal protein P1/P2 family. (114 aa)
Rpl3560S ribosomal protein L35; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL29 family. (123 aa)
Rpl27a60S ribosomal protein L27a. (148 aa)
Rpl3lRibosomal protein L3-like; Belongs to the universal ribosomal protein uL3 family. (407 aa)
Rpl1360S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
Rps1240S ribosomal protein S12. (132 aa)
Rps2340S ribosomal protein S23; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (143 aa)
Rps2740S ribosomal protein S27; Component of the small ribosomal subunit (By similarity). Required for proper rRNA processing and maturation of 18S rRNAs (By similarity); Belongs to the eukaryotic ribosomal protein eS27 family. (84 aa)
Rpl38-ps360S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
Rps340S ribosomal protein S3; Involved in translation as a component of the 40S small ribosomal subunit (By similarity). Has endonuclease activity and plays a role in repair of damaged DNA. Cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA (By similarity). Displays high binding affinity for 7,8-dihydro-8- oxoguanine (8-oxoG), a common DNA lesion caused by reactive oxygen species (ROS) (By similarity). Has also been shown to bind with similar affinity to intact and damaged DNA (By similarity). S [...] (243 aa)
Rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
Rpl18a60S ribosomal protein L18a. (176 aa)
Rps540S ribosomal protein S5, N-terminally processed; Belongs to the universal ribosomal protein uS7 family. (204 aa)
Rps1640S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (146 aa)
Uba52Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be in [...] (128 aa)
Rps1940S ribosomal protein S19; Required for pre-rRNA processing and maturation of 40S ribosomal subunits; Belongs to the eukaryotic ribosomal protein eS19 family. (145 aa)
Srp19Signal recognition particle 19 (Predicted), isoform CRA_a. (144 aa)
Rpl13a60S ribosomal protein L13a; Associated with ribosomes but is not required for canonical ribosome function and has extra-ribosomal functions Component of the GAIT (gamma interferon-activated inhibitor of translation) complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes. Upon interferon-gamma activation and subsequent phosphorylation dissociates from the ribosome and assembles into the GAIT complex which binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs (such as ceruplasmin) and suppres [...] (203 aa)
Rpl2760S ribosomal protein L27; Component of the large ribosomal subunit (By similarity). Required for proper rRNA processing and maturation of 28S and 5.8S rRNAs (By similarity). (136 aa)
Rpl1860S ribosomal protein L18; Component of the large ribosomal subunit. (189 aa)
Srp68Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family. (625 aa)
Rpl3160S ribosomal protein L31; Belongs to the eukaryotic ribosomal protein eL31 family. (125 aa)
Rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (124 aa)
Rps1540S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
Rpl560S ribosomal protein L5; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (297 aa)
Rps1340S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (151 aa)
Rpl660S ribosomal protein L6; Component of the large ribosomal subunit. (298 aa)
LOC10091157560S acidic ribosomal protein P2; Plays an important role in the elongation step of protein synthesis; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
LOC10036078160S ribosomal protein L37; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (97 aa)
Rpl17-260S ribosomal protein L17; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL22 family. (177 aa)
Rpl39lRibosomal protein L39-like. (51 aa)
Rpl10lRibosomal protein L10-like. (214 aa)
LOC10369082160S ribosomal protein L39; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)
LOC10255545360S ribosomal protein L12; Binds directly to 26S ribosomal RNA. (165 aa)
LOC10036044960S ribosomal protein L9; Belongs to the universal ribosomal protein uL6 family. (192 aa)
D4A771_RATUncharacterized protein. (110 aa)
RGD1566373Similar to large subunit ribosomal protein L36a. (106 aa)
Rps21-240S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (83 aa)
RGD1564606Similar to 60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (156 aa)
Rps10l140S ribosomal protein S10; Component of the 40S ribosomal subunit. (165 aa)
Rps4x40S ribosomal protein S4, X isoform; Belongs to the eukaryotic ribosomal protein eS4 family. (290 aa)
D3ZZ95_RAT60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (106 aa)
D4AD70_RATUncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
D3ZPN7_RATUncharacterized protein. (160 aa)
LOC10036011760S ribosomal protein L8; Component of the large ribosomal subunit. Belongs to the universal ribosomal protein uL2 family. (257 aa)
D4A6B9_RATRibosomal_L7Ae domain-containing protein. (266 aa)
Rps18l140S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family. (152 aa)
Rpl36al60S ribosomal protein L36a. (106 aa)
D3ZDE0_RATUncharacterized protein. (106 aa)
LOC10036346940S ribosomal protein S24; Required for processing of pre-rRNA and maturation of 40S ribosomal subunits; Belongs to the eukaryotic ribosomal protein eS24 family. (133 aa)
Srp54aSignal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein); Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
Rpl31l4Uncharacterized protein. (125 aa)
Rps4y240S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
Rpl6-ps160S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (298 aa)
D3ZJD3_RATRibosomal_L28e domain-containing protein. (137 aa)
Rpl3060S ribosomal protein L30; Belongs to the eukaryotic ribosomal protein eL30 family. (115 aa)
D4A4W9_RATUncharacterized protein. (117 aa)
Rpl2860S ribosomal protein L28; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL28 family. (137 aa)
Rps1440S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
rCG_34378RCG34378, isoform CRA_h; Belongs to the universal ribosomal protein uS5 family. (267 aa)
D4A1Z2_RATKOW domain-containing protein. (145 aa)
Rpl3660S ribosomal protein L36; Component of the large ribosomal subunit. (105 aa)
Rps2840S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (69 aa)
Rpl360S ribosomal protein L3; The L3 protein is a component of the large subunit of cytoplasmic ribosomes. (403 aa)
Rps1140S ribosomal protein S11. (158 aa)
RGD156163540S ribosomal protein S17; Belongs to the eukaryotic ribosomal protein eS17 family. (135 aa)
RGD156461760S ribosomal protein L36a-like. (105 aa)
LOC10035995140S ribosomal protein S20. (119 aa)
Rpl1060S ribosomal protein L10; Component of the large ribosomal subunit. Plays a role in the formation of actively translating ribosomes. May play a role in the embryonic brain development. (214 aa)
Rps27l40S ribosomal protein S27-like; Belongs to the eukaryotic ribosomal protein eS27 family. (84 aa)
Rpl12-ps1Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
Rpl2660S ribosomal protein L26. (145 aa)
Rpl1160S ribosomal protein L11; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through [...] (188 aa)
Rpl1460S ribosomal protein L14; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL14 family. (219 aa)
UbcUbiquitin-related; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repa [...] (810 aa)
Rps840S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
Rps940S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
Rps15a40S ribosomal protein S15a; Structural component of the ribosome. Required for proper erythropoiesis; Belongs to the universal ribosomal protein uS8 family. (130 aa)
Rps740S ribosomal protein S7; Required for rRNA maturation. (194 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
Server load: low (12%) [HD]