STRINGSTRING
Col3a1 Col3a1 Col5a2 Col5a2 Col1a1 Col1a1 Col27a1 Col27a1 Col5a1 Col5a1 Col8a2 Col8a2 Col1a2 Col1a2 Col19a1 Col19a1 Col24a1 Col24a1 Col5a3 Col5a3 Col7a1 Col7a1 Col22a1 Col22a1 Col28a1 Col28a1 Col18a1 Col18a1 Col11a2 Col11a2 Col20a1 Col20a1 Col26a1 Col26a1 Col8a1 Col8a1 Col16a1 Col16a1 Col11a1 Col11a1 LOC103693323 LOC103693323 Col14a1 Col14a1 Col25a1 Col25a1 LOC100909752 LOC100909752 Col2a1 Col2a1 Col13a1 Col13a1 Col17a1 Col17a1 Col10a1 Col10a1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Col3a1Collagen alpha-1(III) chain; Collagen type III occurs in most soft connective tissues along with type I collagen. Involved in regulation of cortical development. Is the major ligand of ADGRG1 in the developing brain and binding to ADGRG1 inhibits neuronal migration and activates the RhoA pathway by coupling ADGRG1 to GNA13 and possibly GNA12 (By similarity). (1463 aa)
Col5a2Collagen type V alpha 2 chain. (1494 aa)
Col1a1Collagen alpha-1(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family. (1453 aa)
Col27a1Collagen alpha-1(XXVII) chain; Plays a role during the calcification of cartilage and the transition of cartilage to bone. (1855 aa)
Col5a1Collagen alpha-1(V) chain; Type V collagen is a member of group I collagen (fibrillar forming collagen). It is a minor connective tissue component of nearly ubiquitous distribution. Type V collagen binds to DNA, heparan sulfate, thrombospondin, heparin, and insulin (By similarity). (1840 aa)
Col8a2Collagen type VIII alpha 2 chain. (699 aa)
Col1a2Collagen alpha-2(I) chain; Type I collagen is a member of group I collagen (fibrillar forming collagen); Belongs to the fibrillar collagen family. (1372 aa)
Col19a1Collagen type XIX alpha 1 chain. (1129 aa)
Col24a1Collagen type XXIV alpha 1 chain. (1352 aa)
Col5a3Procollagen, type V, alpha 3, isoform CRA_b. (1737 aa)
Col7a1Procollagen, type VII, alpha 1 (Predicted). (2588 aa)
Col22a1Collagen type XXII alpha 1 chain. (1613 aa)
Col28a1Collagen type XXVIII alpha 1 chain. (1142 aa)
Col18a1Procollagen, type XVIII, alpha 1, isoform CRA_a. (1311 aa)
Col11a2Procollagen, type XI, alpha 2 (Mapped). (1650 aa)
Col20a1Collagen type XX alpha 1 chain. (1362 aa)
Col26a1Collagen type XXVI alpha 1 chain. (440 aa)
Col8a1Collagen type VIII alpha 1 chain. (744 aa)
Col16a1Collagen type XVI alpha 1 chain. (1618 aa)
Col11a1Collagen alpha-1(XI) chain; May play an important role in fibrillogenesis by controlling lateral growth of collagen II fibrils. (1804 aa)
LOC103693323Collagen alpha-1(XXIII) chain. (532 aa)
Col14a1Collagen type XIV alpha 1 chain. (1794 aa)
Col25a1Collagen type XXV alpha 1 chain. (503 aa)
LOC100909752Procollagen, type XV, isoform CRA_a. (1345 aa)
Col2a1Collagen alpha-1(II) chain; Type II collagen is specific for cartilaginous tissues. It is essential for the normal embryonic development of the skeleton, for linear growth and for the ability of cartilage to resist compressive forces. (1419 aa)
Col13a1Similar to alpha 1 type XIII collagen isoform 17, isoform CRA_a. (739 aa)
Col17a1Collagen type XVII alpha 1 chain. (1465 aa)
Col10a1Collagen type X alpha 1 chain. (680 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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