STRINGSTRING
Rfxapl1 Rfxapl1 RT1-Db1 RT1-Db1 RT1-Ba RT1-Ba RT1-Bb RT1-Bb RT1-DOb RT1-DOb Tap2 Tap2 Tap1 Tap1 RT1-M3-1 RT1-M3-1 RT1-N3 RT1-N3 RT1-S3 RT1-S3 LOC103694380 LOC103694380 Ciita Ciita Calr Calr Hspa2 Hspa2 Cd8b Cd8b Cd8a Cd8a LOC103692716 LOC103692716 Ifng Ifng Lgmn Lgmn Ctsb Ctsb Creb1 Creb1 Pdia3 Pdia3 Cd4 Cd4 B2m B2m Hspa4 Hspa4 Hspa5 Hspa5 Ctsl Ctsl Psme1 Psme1 Ifi30 Ifi30 Psme2 Psme2 Hsp90ab1 Hsp90ab1 Psme3 Psme3 RT1-M4 RT1-M4 Kir3dl1 Kir3dl1 RT1-Ha RT1-Ha RT1-DOa RT1-DOa RT1-CE10 RT1-CE10 Canx Canx RT1-CE1 RT1-CE1 Rfxank Rfxank RT1-Db2 RT1-Db2 RT1-T24-4 RT1-T24-4 RT1-M2 RT1-M2 Tapbp Tapbp RT1-M5 RT1-M5 RT1-M6-2 RT1-M6-2 RT1-Da RT1-Da RT1-CE3 RT1-CE3 RT1-N2 RT1-N2 RT1-T24-1 RT1-T24-1 RT1-A2 RT1-A2 RT1-CE15 RT1-CE15 Nfyc Nfyc RT1-CE5 RT1-CE5 LOC680121 LOC680121 Rfx5 Rfx5 Nfyb Nfyb Calr4 Calr4 Hspa1l Hspa1l LOC688340 LOC688340 RT1-DMb RT1-DMb RT1-DMa RT1-DMa Hspa1a Hspa1a Klrc1 Klrc1 RT1-A RT1-A RT1-T24-3 RT1-T24-3 RT1-CE12 RT1-CE12 Klrd1 Klrd1 Nfya Nfya
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rfxapl1Regulatory factor X-associated protein-like 1. (204 aa)
RT1-Db1Rano class II histocompatibility antigen, D-1 beta chain; Involved in the presentation of foreign antigens to the immune system; Belongs to the MHC class II family. (264 aa)
RT1-BaRano class II histocompatibility antigen, B alpha chain. (255 aa)
RT1-BbRano class II histocompatibility antigen, B-1 beta chain; Involved in the presentation of foreign antigens to the immune system; Belongs to the MHC class II family. (263 aa)
RT1-DObRT1 class II, locus DOb. (272 aa)
Tap2Antigen peptide transporter 2; Involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum for association with MHC class I molecules. Also acts as a molecular scaffold for the final stage of MHC class I folding, namely the binding of peptide. Nascent MHC class I molecules associate with TAP via tapasin (By similarity). (703 aa)
Tap1Antigen peptide transporter 1; Involved in the transport of antigens from the cytoplasm to the endoplasmic reticulum for association with MHC class I molecules. Also acts as a molecular scaffold for the final stage of MHC class I folding, namely the binding of peptide. Nascent MHC class I molecules associate with TAP via tapasin (By similarity). (725 aa)
RT1-M3-1RT1 class Ib, locus M3, isoform CRA_a; Belongs to the MHC class I family. (339 aa)
RT1-N3RT1 class Ib gene, H2-TL-like, grc region (N3); Belongs to the MHC class I family. (393 aa)
RT1-S3RT1 class Ib, locus S3; Belongs to the MHC class I family. (365 aa)
LOC103694380Tumor necrosis factor, membrane form; Cytokine that binds to TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. It is mainly secreted by macrophages and can induce cell death of certain tumor cell lines. It is potent pyrogen causing fever by direct action or by stimulation of interleukin-1 secretion and is implicated in the induction of cachexia, Under certain conditions it can stimulate cell proliferation and induce cell differentiation (By similarity). Induces insulin resistance in adipocytes via inhibition of insulin-induced IRS1 tyrosine phosphorylation and insulin-induced glucose uptake. Induces [...] (235 aa)
CiitaClass II, major histocompatibility complex, transactivator, isoform CRA_c. (1153 aa)
CalrCalreticulin; Calcium-binding chaperone that promotes folding, oligomeric assembly and quality control in the endoplasmic reticulum (ER) via the calreticulin/calnexin cycle. This lectin interacts transiently with almost all of the monoglucosylated glycoproteins that are synthesized in the ER. Interacts with the DNA-binding domain of NR3C1 and mediates its nuclear export. Involved in maternal gene expression regulation. May participate in oocyte maturation via the regulation of calcium homeostasis. (416 aa)
Hspa2Heat shock-related 70 kDa protein 2; Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis [...] (633 aa)
Cd8bT-cell surface glycoprotein CD8 beta chain; Integral membrane glycoprotein that plays an essential role in the immune response and serves multiple functions in responses against both external and internal offenses. In T-cells, functions primarily as a coreceptor for MHC class I molecule:peptide complex. The antigens presented by class I peptides are derived from cytosolic proteins while class II derived from extracellular proteins. Interacts simultaneously with the T-cell receptor (TCR) and the MHC class I proteins presented by antigen presenting cells (APCs). In turn, recruits the Src [...] (208 aa)
Cd8aT-cell surface glycoprotein CD8 alpha chain; Integral membrane glycoprotein that plays an essential role in the immune response and serves multiple functions in responses against both external and internal offenses. In T-cells, functions primarily as a coreceptor for MHC class I molecule:peptide complex. The antigens presented by class I peptides are derived from cytosolic proteins while class II derived from extracellular proteins. Interacts simultaneously with the T-cell receptor (TCR) and the MHC class I proteins presented by antigen presenting cells (APCs). In turn, recruits the Sr [...] (236 aa)
LOC103692716Heat shock protein HSP 90-alpha; Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity which is essential for its chaperone activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function. Engages with a ra [...] (733 aa)
IfngInterferon gamma; Produced by lymphocytes activated by specific antigens or mitogens. IFN-gamma, in addition to having antiviral activity, has important immunoregulatory functions. It is a potent activator of macrophages, it has antiproliferative effects on transformed cells and it can potentiate the antiviral and antitumor effects of the type I interferons; Belongs to the type II (or gamma) interferon family. (156 aa)
LgmnLegumain; Has a strict specificity for hydrolysis of asparaginyl bonds. Can also cleave aspartyl bonds slowly, especially under acidic conditions. Required for normal lysosomal protein degradation in renal proximal tubules. Required for normal degradation of internalized EGFR. Plays a role in the regulation of cell proliferation via its role in EGFR degradation. May be involved in the processing of proteins for MHC class II antigen presentation in the lysosomal/endosomal system (By similarity); Belongs to the peptidase C13 family. (435 aa)
CtsbCathepsin B heavy chain; Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Cleaves matrix extracellular phosphoglycoprotein MEPE (By similarity). Involved in the solubilization of cross-linked TG/thyroglobulin in the thyroid follicle lumen (By similarity). Has also been implicated in tumor invasion and metastasis (By similarity). Belongs to the peptidase C1 family. (339 aa)
Creb1Cyclic AMP-responsive element-binding protein 1; Phosphorylation-dependent transcription factor that stimulates transcription upon binding to the DNA cAMP response element (CRE), a sequence present in many viral and cellular promoters. Transcription activation is enhanced by the TORC coactivators which act independently of Ser-117 phosphorylation. Involved in different cellular processes including the synchronization of circadian rhythmicity and the differentiation of adipose cells (By similarity). Belongs to the bZIP family. (341 aa)
Pdia3Protein disulfide-isomerase A3. (510 aa)
Cd4T-cell surface glycoprotein CD4; Integral membrane glycoprotein that plays an essential role in the immune response and serves multiple functions in responses against both external and internal offenses. In T-cells, functions primarily as a coreceptor for MHC class II molecule:peptide complex. The antigens presented by class II peptides are derived from extracellular proteins while class I peptides are derived from cytosolic proteins. Interacts simultaneously with the T-cell receptor (TCR) and the MHC class II presented by antigen presenting cells (APCs). In turn, recruits the Src kina [...] (457 aa)
B2mBeta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system. (119 aa)
Hspa4Heat shock 70 kDa protein 4; Belongs to the heat shock protein 70 family. (840 aa)
Hspa5Endoplasmic reticulum chaperone BiP; Endoplasmic reticulum chaperone that plays a key role in protein folding and quality control in the endoplasmic reticulum lumen (By similarity). Involved in the correct folding of proteins and degradation of misfolded proteins via its interaction with DNAJC10/ERdj5, probably to facilitate the release of DNAJC10/ERdj5 from its substrate (By similarity). Acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR). In the unstressed endoplasmic reticulum, recruited by DNAJB9/ERdj4 to the luminal region of ERN1/IRE1, leading to dis [...] (654 aa)
CtslCathepsin L1 heavy chain; Thiol protease important for the overall degradation of proteins in lysosomes (Probable). Involved in the solubilization of cross-linked TG/thyroglobulin and in the subsequent release of thyroid hormone thyroxine (T4) by limited proteolysis of TG/thyroglobulin in the thyroid follicle lumen (By similarity). Belongs to the peptidase C1 family. (334 aa)
Psme1Proteasome activator complex subunit 1; Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome. (249 aa)
Ifi30Gamma-interferon-inducible lysosomal thiol reductase; Lysosomal thiol reductase that can reduce protein disulfide bonds. May facilitate the complete unfolding of proteins destined for lysosomal degradation. Plays an important role in antigen processing. Facilitates the generation of MHC class II-restricted epitodes from disulfide bond-containing antigen by the endocytic reduction of disulfide bonds. Facilitates also MHC class I-restricted recognition of exogenous antigens containing disulfide bonds by CD8+ T-cells or crosspresentation (By similarity); Belongs to the GILT family. (248 aa)
Psme2Proteasome activator complex subunit 2; Implicated in immunoproteasome assembly and required for efficient antigen processing. The PA28 activator complex enhances the generation of class I binding peptides by altering the cleavage pattern of the proteasome. (238 aa)
Hsp90ab1Heat shock protein HSP 90-beta; Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co- chaperones that modulate its substrate recognition, ATPase cycle and chaperone function. Engages with a range of client protein classes via its interact [...] (724 aa)
Psme3Proteasome (Prosome, macropain) activator subunit 3. (254 aa)
RT1-M4RT1 class Ib, locus M4; Belongs to the MHC class I family. (341 aa)
Kir3dl1Killer cell immunoglobulin-like receptor 3DL1; Receptor on natural killer (NK) cells. Inhibits the activity of NK cells thus preventing cell lysis; Belongs to the immunoglobulin superfamily. (422 aa)
RT1-HaRT1 class II, locus Ha; Belongs to the MHC class II family. (216 aa)
RT1-DOaRT1 class II, locus DOa; Belongs to the MHC class II family. (250 aa)
RT1-CE10RT1 class I, locus CE10; Belongs to the MHC class I family. (367 aa)
CanxCalnexin; Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins. Associated with partial T-cell antigen receptor complexes that escape the ER of immature thymocytes, it may function as a signaling complex regulating thymocyte maturation. Additionally it may play a role in receptor-mediated endocytosis at t [...] (591 aa)
RT1-CE1RT1 class I, locus1; Belongs to the MHC class I family. (375 aa)
RfxankRegulatory factor X-associated ankyrin-containing protein. (284 aa)
RT1-Db2MHC class II beta chain. (287 aa)
RT1-T24-4Histocompatibility 2, T region locus 24; Belongs to the MHC class I family. (373 aa)
RT1-M2RT1 class Ib, locus M2; Belongs to the MHC class I family. (344 aa)
TapbpTap-binding protein (Tapasin). (464 aa)
RT1-M5RT1 class Ib, locus M5; Belongs to the MHC class I family. (357 aa)
RT1-M6-2RT1 class I, locus M6, gene 2; Belongs to the MHC class I family. (332 aa)
RT1-DaHistocompatibility 2, class II antigen E alpha; Belongs to the MHC class II family. (255 aa)
RT1-CE3RT1 class I, locus CE3; Belongs to the MHC class I family. (352 aa)
RT1-N2RCG41803, isoform CRA_a; Belongs to the MHC class I family. (377 aa)
RT1-T24-1RT1 class I, locus T24, gene 1; Belongs to the MHC class I family. (330 aa)
RT1-A2RT1 class I histocompatibility antigen, AA alpha chain; Involved in the presentation of foreign antigens to the immune system. (366 aa)
RT1-CE15RT1 class I, locus CE11-like; Belongs to the MHC class I family. (353 aa)
NfycNuclear transcription factor Y subunit gamma; Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors. (335 aa)
RT1-CE5RT1 class I, locus CE5; Belongs to the MHC class I family. (375 aa)
LOC680121Heat shock cognate 71 kDa protein; Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis a [...] (646 aa)
Rfx5Regulatory factor X, 5 (Influences HLA class II expression) (Predicted). (681 aa)
NfybNuclear transcription factor Y subunit beta; Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors. (207 aa)
Calr4Calreticulin. (439 aa)
Hspa1lHeat shock 70 kDa protein 1-like; Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis an [...] (641 aa)
LOC688340T-cell receptor alpha chain V region PHDS58-like. (113 aa)
RT1-DMbMajor histocompatibility complex, class II, DM beta, isoform CRA_a. (261 aa)
RT1-DMaMajor histocompatibility complex, class II, DM alpha; Belongs to the MHC class II family. (260 aa)
Hspa1aHeat shock 70 kDa protein 1A; Molecular chaperone implicated in a wide variety of cellular processes, including protection of the proteome from stress, folding and transport of newly synthesized polypeptides, activation of proteolysis of misfolded proteins and the formation and dissociation of protein complexes. Plays a pivotal role in the protein quality control system, ensuring the correct folding of proteins, the re-folding of misfolded proteins and controlling the targeting of proteins for subsequent degradation. This is achieved through cycles of ATP binding, ATP hydrolysis and AD [...] (641 aa)
Klrc1Killer cell lectin-like receptor C1. (234 aa)
RT1-ART1 class Ia, locus A1; Belongs to the MHC class I family. (382 aa)
RT1-T24-3RT1 class I, locus T24, gene 3; Belongs to the MHC class I family. (316 aa)
RT1-CE12Ig-like domain-containing protein; Belongs to the MHC class I family. (371 aa)
Klrd1Natural killer cells antigen CD94; Plays a role as a receptor for the recognition of MHC class I HLA-E molecules by NK cells and some cytotoxic T-cells. (179 aa)
NfyaNuclear transcription factor Y subunit alpha; Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors. NF-YA positively regulates the transcription of the core clock component ARNTL/BMAL1; Belongs to the NFYA/HAP2 subunit family. (347 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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