STRINGSTRING
RT1-Db1 RT1-Db1 RT1-Ba RT1-Ba RT1-Bb RT1-Bb RT1-DOb RT1-DOb Fyn Fyn RT1-M3-1 RT1-M3-1 RT1-N3 RT1-N3 RT1-S3 RT1-S3 Cd40lg Cd40lg Rac1 Rac1 Itgb2 Itgb2 Cd80 Cd80 Cd86 Cd86 Sgca Sgca Rac2 Rac2 LOC100909750 LOC100909750 Cd28 Cd28 Cycs Cycs Casp3 Casp3 Lama2 Lama2 Casp8 Casp8 Bid Bid Casp9 Casp9 Sgcg Sgcg Lama1 Lama1 Myh6 Myh6 Myh7 Myh7 Itgal Itgal Dag1 Dag1 Icam1 Icam1 Ccnd1 Ccnd1 RT1-M4 RT1-M4 RT1-Ha RT1-Ha RT1-DOa RT1-DOa RT1-CE10 RT1-CE10 RT1-CE1 RT1-CE1 Cxadr Cxadr RT1-Db2 RT1-Db2 RT1-T24-4 RT1-T24-4 RT1-M2 RT1-M2 Abl1 Abl1 RT1-M5 RT1-M5 RT1-M6-2 RT1-M6-2 RT1-Da RT1-Da RT1-CE3 RT1-CE3 Eif4g1 Eif4g1 RT1-N2 RT1-N2 RT1-T24-1 RT1-T24-1 RT1-A2 RT1-A2 RT1-CE15 RT1-CE15 Actg1 Actg1 Cd40 Cd40 Abl2 Abl2 RT1-CE5 RT1-CE5 Eif4g2 Eif4g2 LOC688340 LOC688340 RT1-DMb RT1-DMb RT1-DMa RT1-DMa Eif4g3 Eif4g3 RT1-A RT1-A Sgcb Sgcb Actb Actb Cav1 Cav1 RT1-T24-3 RT1-T24-3 RGD1565478 RGD1565478 RT1-CE12 RT1-CE12
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RT1-Db1Rano class II histocompatibility antigen, D-1 beta chain; Involved in the presentation of foreign antigens to the immune system; Belongs to the MHC class II family. (264 aa)
RT1-BaRano class II histocompatibility antigen, B alpha chain. (255 aa)
RT1-BbRano class II histocompatibility antigen, B-1 beta chain; Involved in the presentation of foreign antigens to the immune system; Belongs to the MHC class II family. (263 aa)
RT1-DObRT1 class II, locus DOb. (272 aa)
FynTyrosine-protein kinase Fyn; Non-receptor tyrosine-protein kinase that plays a role in many biological processes including regulation of cell growth and survival, cell adhesion, integrin-mediated signaling, cytoskeletal remodeling, cell motility, immune response and axon guidance. Inactive FYN is phosphorylated on its C-terminal tail within the catalytic domain. Following activation by PKA, the protein subsequently associates with PTK2/FAK1, allowing PTK2/FAK1 phosphorylation, activation and targeting to focal adhesions. Involved in the regulation of cell adhesion and motility through [...] (537 aa)
RT1-M3-1RT1 class Ib, locus M3, isoform CRA_a; Belongs to the MHC class I family. (339 aa)
RT1-N3RT1 class Ib gene, H2-TL-like, grc region (N3); Belongs to the MHC class I family. (393 aa)
RT1-S3RT1 class Ib, locus S3; Belongs to the MHC class I family. (365 aa)
Cd40lgCD40 ligand, membrane form; Cytokine that acts as a ligand to CD40/TNFRSF5 (By similarity). Costimulates T-cell proliferation and cytokine production (By similarity). Its cross-linking on T-cells generates a costimulatory signal which enhances the production of IL4 and IL10 in conjunction with the TCR/CD3 ligation and CD28 costimulation (By similarity). Induces the activation of NF-kappa-B (By similarity). Induces the activation of kinases MAPK8 and PAK2 in T-cells (By similarity). Mediates B-cell proliferation in the absence of co-stimulus as well as IgE production in the presence of [...] (260 aa)
Rac1Ras-related C3 botulinum toxin substrate 1; Plasma membrane-associated small GTPase which cycles between active GTP-bound and inactive GDP-bound states. In its active state, binds to a variety of effector proteins to regulate cellular responses such as secretory processes, phagocytosis of apoptotic cells, epithelial cell polarization, neurons adhesion, migration and differentiation, and growth-factor induced formation of membrane ruffles. Rac1 p21/rho GDI heterodimer is the active component of the cytosolic factor sigma 1, which is involved in stimulation of the NADPH oxidase activity [...] (192 aa)
Itgb2Integrin beta. (768 aa)
Cd80CD80 antigen, isoform CRA_a. (321 aa)
Cd86Cd86 antigen, isoform CRA_c. (313 aa)
SgcaSarcoglycan, alpha (Dystrophin-associated glycoprotein) (Predicted), isoform CRA_a. (387 aa)
Rac2Ras-related C3 botulinum toxin substrate 2 (Rho family, small GTP binding protein Rac2). (192 aa)
LOC100909750Tyrosine-protein kinase. (1124 aa)
Cd28T-cell-specific surface glycoprotein CD28; Involved in T-cell activation, the induction of cell proliferation and cytokine production and promotion of T-cell survival. Enhances the production of IL4 and IL10 in T-cells in conjunction with TCR/CD3 ligation and CD40L costimulation. (218 aa)
CycsCytochrome c, somatic; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (105 aa)
Casp3Caspase-3 subunit p12; Involved in the activation cascade of caspases responsible for apoptosis execution. At the onset of apoptosis it proteolytically cleaves poly(ADP-ribose) polymerase (PARP) at a '216-Asp-|-Gly-217' bond. Cleaves and activates sterol regulatory element binding proteins (SREBPs) between the basic helix-loop-helix leucine zipper domain and the membrane attachment domain. Cleaves and activates caspase-6, -7 and -9. Triggers cell adhesion in sympathetic neurons through RET cleavage (By similarity); Belongs to the peptidase C14A family. (277 aa)
Lama2Laminin subunit alpha 2. (3121 aa)
Casp8Caspase-8 subunit p10; Most upstream protease of the activation cascade of caspases responsible for the TNFRSF6/FAS mediated and TNFRSF1A induced cell death. Binding to the adapter molecule FADD recruits it to either receptor. The resulting aggregate called death-inducing signaling complex (DISC) performs CASP8 proteolytic activation. The active dimeric enzyme is then liberated from the DISC and free to activate downstream apoptotic proteases. Proteolytic fragments of the N-terminal propeptide (termed CAP3, CAP5 and CAP6) are likely retained in the DISC. Cleaves and activates CASP3, CA [...] (482 aa)
BidBH3-interacting domain death agonist p11; Induces caspases and apoptosis. Counters the protective effect of Bcl-2. The major proteolytic product p15 BID allows the release of cytochrome c (By similarity). (196 aa)
Casp9Caspase 9, isoform CRA_a; Belongs to the peptidase C14A family. (454 aa)
SgcgSarcoglycan, gamma (Dystrophin-associated glycoprotein). (292 aa)
Lama1Laminin subunit alpha 1. (3083 aa)
Myh6Myosin-6; Muscle contraction. (1938 aa)
Myh7Myosin-7; Myosins are actin-based motor molecules with ATPase activity essential for muscle contraction. Forms regular bipolar thick filaments that, together with actin thin filaments, constitute the fundamental contractile unit of skeletal and cardiac muscle. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1935 aa)
ItgalIntegrin subunit alpha L; Belongs to the integrin alpha chain family. (1161 aa)
Dag1Dystroglycan 1. (893 aa)
Icam1Intercellular adhesion molecule 1; ICAM proteins are ligands for the leukocyte adhesion protein LFA-1 (integrin alpha-L/beta-2). During leukocyte trans-endothelial migration, ICAM1 engagement promotes the assembly of endothelial apical cups through ARHGEF26/SGEF and RHOG activation (By similarity). Belongs to the immunoglobulin superfamily. ICAM family. (545 aa)
Ccnd1G1/S-specific cyclin-D1; Regulatory component of the cyclin D1-CDK4 (DC) complex that phosphorylates and inhibits members of the retinoblastoma (RB) protein family including RB1 and regulates the cell-cycle during G(1)/S transition. Phosphorylation of RB1 allows dissociation of the transcription factor E2F from the RB/E2F complex and the subsequent transcription of E2F target genes which are responsible for the progression through the G(1) phase. Hypophosphorylates RB1 in early G(1) phase. Cyclin D-CDK4 complexes are major integrators of various mitogenenic and antimitogenic signals. A [...] (295 aa)
RT1-M4RT1 class Ib, locus M4; Belongs to the MHC class I family. (341 aa)
RT1-HaRT1 class II, locus Ha; Belongs to the MHC class II family. (216 aa)
RT1-DOaRT1 class II, locus DOa; Belongs to the MHC class II family. (250 aa)
RT1-CE10RT1 class I, locus CE10; Belongs to the MHC class I family. (367 aa)
RT1-CE1RT1 class I, locus1; Belongs to the MHC class I family. (375 aa)
CxadrCoxsackievirus and adenovirus receptor homolog; Component of the epithelial apical junction complex that may function as a homophilic cell adhesion molecule and is essential for tight junction integrity. Also involved in transepithelial migration of leukocytes through adhesive interactions with JAML a transmembrane protein of the plasma membrane of leukocytes. The interaction between both receptors also mediates the activation of gamma-delta T-cells, a subpopulation of T-cells residing in epithelia and involved in tissue homeostasis and repair. Upon epithelial CXADR-binding, JAML induc [...] (352 aa)
RT1-Db2MHC class II beta chain. (287 aa)
RT1-T24-4Histocompatibility 2, T region locus 24; Belongs to the MHC class I family. (373 aa)
RT1-M2RT1 class Ib, locus M2; Belongs to the MHC class I family. (344 aa)
Abl1Tyrosine-protein kinase. (1143 aa)
RT1-M5RT1 class Ib, locus M5; Belongs to the MHC class I family. (357 aa)
RT1-M6-2RT1 class I, locus M6, gene 2; Belongs to the MHC class I family. (332 aa)
RT1-DaHistocompatibility 2, class II antigen E alpha; Belongs to the MHC class II family. (255 aa)
RT1-CE3RT1 class I, locus CE3; Belongs to the MHC class I family. (352 aa)
Eif4g1Eukaryotic translation initiation factor 4 gamma, 1. (1598 aa)
RT1-N2RCG41803, isoform CRA_a; Belongs to the MHC class I family. (377 aa)
RT1-T24-1RT1 class I, locus T24, gene 1; Belongs to the MHC class I family. (330 aa)
RT1-A2RT1 class I histocompatibility antigen, AA alpha chain; Involved in the presentation of foreign antigens to the immune system. (366 aa)
RT1-CE15RT1 class I, locus CE11-like; Belongs to the MHC class I family. (353 aa)
Actg1Actin, cytoplasmic 2, N-terminally processed; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells; Belongs to the actin family. (375 aa)
Cd40Tumor necrosis factor receptor superfamily, member 5, isoform CRA_a. (289 aa)
Abl2Tyrosine-protein kinase. (1208 aa)
RT1-CE5RT1 class I, locus CE5; Belongs to the MHC class I family. (375 aa)
Eif4g2Eukaryotic translation initiation factor 4, gamma 2. (906 aa)
LOC688340T-cell receptor alpha chain V region PHDS58-like. (113 aa)
RT1-DMbMajor histocompatibility complex, class II, DM beta, isoform CRA_a. (261 aa)
RT1-DMaMajor histocompatibility complex, class II, DM alpha; Belongs to the MHC class II family. (260 aa)
Eif4g3Eukaryotic translation initiation factor 4 gamma, 3. (1614 aa)
RT1-ART1 class Ia, locus A1; Belongs to the MHC class I family. (382 aa)
SgcbSarcoglycan, beta. (320 aa)
ActbActin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (378 aa)
Cav1Caveolin-1; May act as a scaffolding protein within caveolar membranes. Forms a stable heterooligomeric complex with CAV2 that targets to lipid rafts and drives caveolae formation. Mediates the recruitment of CAVIN proteins (CAVIN1/2/3/4) to the caveolae (By similarity). Interacts directly with G-protein alpha subunits and can functionally regulate their activity (By similarity). Involved in the costimulatory signal essential for T-cell receptor (TCR)-mediated T-cell activation. Its binding to DPP4 induces T-cell proliferation and NF-kappa-B activation in a T-cell receptor/CD3-dependen [...] (178 aa)
RT1-T24-3RT1 class I, locus T24, gene 3; Belongs to the MHC class I family. (316 aa)
RGD1565478Ig-like domain-containing protein. (115 aa)
RT1-CE12Ig-like domain-containing protein; Belongs to the MHC class I family. (371 aa)
Your Current Organism:
Rattus norvegicus
NCBI taxonomy Id: 10116
Other names: Buffalo rat, Norway rat, R. norvegicus, Rattus PC12 clone IS, Rattus sp. strain Wistar, Sprague-Dawley rat, Wistar rats, brown rat, laboratory rat, rat, rats, zitter rats
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