(5 nodes) Mixed, incl. F-box only protein 5/43, and Zinc finger, RING-H2-type network (Cavia porcellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FBXO43	F-box protein 43. (622 aa)
	BTRC	Beta-transducin repeat containing E3 ubiquitin protein ligase. (582 aa)
	CUL1	Cullin 1; Belongs to the cullin family. (776 aa)
	RBX1	Ring-box 1. (108 aa)
	FBXW11	F-box and WD repeat domain containing 11. (530 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BTRC	CUL1	ENSCPOP00000004942	ENSCPOP00000016460	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Cullin 1; Belongs to the cullin family.	0.999
BTRC	FBXO43	ENSCPOP00000004942	ENSCPOP00000001957	Beta-transducin repeat containing E3 ubiquitin protein ligase.	F-box protein 43.	0.816
BTRC	FBXW11	ENSCPOP00000004942	ENSCPOP00000031139	Beta-transducin repeat containing E3 ubiquitin protein ligase.	F-box and WD repeat domain containing 11.	0.960
BTRC	RBX1	ENSCPOP00000004942	ENSCPOP00000025414	Beta-transducin repeat containing E3 ubiquitin protein ligase.	Ring-box 1.	0.995
CUL1	BTRC	ENSCPOP00000016460	ENSCPOP00000004942	Cullin 1; Belongs to the cullin family.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.999
CUL1	FBXO43	ENSCPOP00000016460	ENSCPOP00000001957	Cullin 1; Belongs to the cullin family.	F-box protein 43.	0.861
CUL1	FBXW11	ENSCPOP00000016460	ENSCPOP00000031139	Cullin 1; Belongs to the cullin family.	F-box and WD repeat domain containing 11.	0.990
CUL1	RBX1	ENSCPOP00000016460	ENSCPOP00000025414	Cullin 1; Belongs to the cullin family.	Ring-box 1.	0.999
FBXO43	BTRC	ENSCPOP00000001957	ENSCPOP00000004942	F-box protein 43.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.816
FBXO43	CUL1	ENSCPOP00000001957	ENSCPOP00000016460	F-box protein 43.	Cullin 1; Belongs to the cullin family.	0.861
FBXO43	FBXW11	ENSCPOP00000001957	ENSCPOP00000031139	F-box protein 43.	F-box and WD repeat domain containing 11.	0.918
FBXO43	RBX1	ENSCPOP00000001957	ENSCPOP00000025414	F-box protein 43.	Ring-box 1.	0.918
FBXW11	BTRC	ENSCPOP00000031139	ENSCPOP00000004942	F-box and WD repeat domain containing 11.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.960
FBXW11	CUL1	ENSCPOP00000031139	ENSCPOP00000016460	F-box and WD repeat domain containing 11.	Cullin 1; Belongs to the cullin family.	0.990
FBXW11	FBXO43	ENSCPOP00000031139	ENSCPOP00000001957	F-box and WD repeat domain containing 11.	F-box protein 43.	0.918
FBXW11	RBX1	ENSCPOP00000031139	ENSCPOP00000025414	F-box and WD repeat domain containing 11.	Ring-box 1.	0.993
RBX1	BTRC	ENSCPOP00000025414	ENSCPOP00000004942	Ring-box 1.	Beta-transducin repeat containing E3 ubiquitin protein ligase.	0.995
RBX1	CUL1	ENSCPOP00000025414	ENSCPOP00000016460	Ring-box 1.	Cullin 1; Belongs to the cullin family.	0.999
RBX1	FBXO43	ENSCPOP00000025414	ENSCPOP00000001957	Ring-box 1.	F-box protein 43.	0.918
RBX1	FBXW11	ENSCPOP00000025414	ENSCPOP00000031139	Ring-box 1.	F-box and WD repeat domain containing 11.	0.993