STRINGSTRING
RPA1 RPA1 TIPIN TIPIN GINS1 GINS1 EXO1 EXO1 ATRIP ATRIP PMS2 PMS2 SASS6 SASS6 RAD52 RAD52 RAD17 RAD17 MCM3 MCM3 Msh5 Msh5 MSH6 MSH6 POLK POLK MSH4 MSH4 ERCC5 ERCC5 FANCM FANCM MEIOB MEIOB XPA XPA BLM BLM H0UX17_CAVPO H0UX17_CAVPO FAAP100 FAAP100 TOP3B TOP3B Pola2 Pola2 POLA1 POLA1 Rad50 Rad50 FANCA FANCA WRN WRN WDHD1 WDHD1 MCM4 MCM4 ORC6 ORC6 PRIM2 PRIM2 MLH1 MLH1 RFC1 RFC1 POLE2 POLE2 ERCC4 ERCC4 ORC2 ORC2 RAD51C RAD51C MCM6 MCM6 SLF1 SLF1 ORC1 ORC1 BRCA2 BRCA2 MCM9 MCM9 FANCE FANCE FANCD2 FANCD2 SPAG7 SPAG7 CHEK2 CHEK2 ATR ATR Pold3 Pold3 FANCI FANCI MCMDC2 MCMDC2 MCM10 MCM10 RBPMS2 RBPMS2 RBBP8 RBBP8 MUS81 MUS81 PIF1 PIF1 DBF4 DBF4 KREMEN2 KREMEN2 ORC4 ORC4 RFC3 RFC3 RPA2 RPA2 MCMBP MCMBP PCNA PCNA MAML1 MAML1 EXD2 EXD2 CHTF18 CHTF18 MCM2 MCM2 RMI1 RMI1 UBE2T UBE2T CDC6 CDC6 TDRD3 TDRD3 FBH1 FBH1 RAD51B RAD51B ATM ATM MSH3 MSH3 RFC4 RFC4 BARD1 BARD1 Clspn Clspn BRIP1 BRIP1 ATAD5 ATAD5 FAAP24 FAAP24 REV1 REV1 FANCG FANCG XRCC2 XRCC2 RFC2 RFC2 CDC7 CDC7 FAN1 FAN1 Brca1 Brca1 POLE POLE HELB HELB NBN NBN RAD51 RAD51 DCLRE1A DCLRE1A DMC1 DMC1 MSH2 MSH2 Rtel1 Rtel1 MRE11 MRE11 H0VSI3_CAVPO H0VSI3_CAVPO ORC3 ORC3 MCPH1 MCPH1 FANCL FANCL RECQL4 RECQL4 Prim1 Prim1 FANCF FANCF XRCC3 XRCC3 H0VYV4_CAVPO H0VYV4_CAVPO RAD9B RAD9B RFC5 RFC5 MAD2L2 MAD2L2 POLD2 POLD2 MCM5 MCM5 REV3L REV3L GINS2 GINS2 CDT1 CDT1 EME1 EME1 Slx1a Slx1a HUS1 HUS1 MLH3 MLH3 POLD1 POLD1 MCM7 MCM7 POLE4 POLE4 RECQL5 RECQL5 Pold4 Pold4 POLE3 POLE3 GINS4 GINS4 Bivm Bivm DNA2 DNA2 SLX4 SLX4 RAD1 RAD1 GEN1 GEN1 Cenpx Cenpx PMS1 PMS1 TIMELESS TIMELESS ORC5 ORC5 RAD9A RAD9A ANKRD12 ANKRD12 GINS3 GINS3 RHNO1 RHNO1 CDC45 CDC45 Tm4sf19 Tm4sf19 LOC100717396 LOC100717396 RPA3 RPA3 TOPBP1 TOPBP1 Mcm8 Mcm8 POLH POLH EME2 EME2 Rchy1 Rchy1 PWWP2A PWWP2A RMI2 RMI2 NUTF2 NUTF2 POLI POLI PIEZO1 PIEZO1 ERCC1 ERCC1 RAD51D RAD51D FANCC FANCC FEN1 FEN1 TOP3A TOP3A
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (249 aa)
GINS1GINS complex subunit 1. (196 aa)
EXO1Exonuclease 1. (839 aa)
ATRIPATR interacting protein. (792 aa)
PMS2PMS1 homolog 2, mismatch repair system component. (890 aa)
SASS6SAS-6 centriolar assembly protein. (590 aa)
RAD52RAD52 homolog, DNA repair protein. (280 aa)
RAD17RAD17 checkpoint clamp loader component. (696 aa)
MCM3DNA helicase; Belongs to the MCM family. (810 aa)
Msh5DNA_MISMATCH_REPAIR_2 domain-containing protein. (828 aa)
MSH6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1336 aa)
POLKDNA polymerase kappa. (540 aa)
MSH4DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (884 aa)
ERCC5ERCC excision repair 5, endonuclease. (1059 aa)
FANCMFA complementation group M. (1971 aa)
MEIOBMeiosis specific with OB-fold. (471 aa)
XPAXPA, DNA damage recognition and repair factor. (263 aa)
BLMBLM RecQ like helicase. (1405 aa)
H0UX17_CAVPOBRCT domain-containing protein. (722 aa)
FAAP100FA core complex associated protein 100. (856 aa)
TOP3BDNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (862 aa)
Pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
POLA1DNA polymerase. (1467 aa)
Rad50Zinc-hook domain-containing protein. (1275 aa)
FANCAFA complementation group A. (1416 aa)
WRNWRN RecQ like helicase. (1462 aa)
WDHD1WD repeat and HMG-box DNA binding protein 1. (1118 aa)
MCM4DNA helicase; Belongs to the MCM family. (863 aa)
ORC6Origin recognition complex subunit 6. (293 aa)
PRIM2DNA primase subunit 2. (432 aa)
MLH1MutL homolog 1. (758 aa)
RFC1Replication factor C subunit 1. (1153 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
ERCC4ERCC excision repair 4, endonuclease catalytic subunit. (916 aa)
ORC2Origin recognition complex subunit 2. (577 aa)
RAD51CRAD51 paralog C. (373 aa)
MCM6DNA helicase; Belongs to the MCM family. (821 aa)
SLF1SMC5-SMC6 complex localization factor 1. (1061 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (837 aa)
BRCA2BRCA2 DNA repair associated. (3151 aa)
MCM9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1117 aa)
FANCEFA complementation group E. (531 aa)
FANCD2FA complementation group D2. (1448 aa)
SPAG7Sperm-associated antigen 7. (227 aa)
CHEK2Checkpoint kinase 2. (546 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2539 aa)
Pold3Uncharacterized protein. (466 aa)
FANCIFA complementation group I. (1313 aa)
MCMDC2Minichromosome maintenance domain containing 2. (657 aa)
MCM10Minichromosome maintenance 10 replication initiation factor. (834 aa)
RBPMS2RNA binding protein, mRNA processing factor 2. (178 aa)
RBBP8RB binding protein 8, endonuclease. (900 aa)
MUS81MUS81 structure-specific endonuclease subunit. (562 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. Efficiently unwinds G-quadruplex (G4) DNA structures and forked RNA-DNA hybrids. Resolves G4 structures, preventing replication pausing and double-strand breaks (DSBs) at G4 motifs. Involved in the maintenance of telomeric DNA. Inhibits telomere elongation, de novo telomere formation and telomere addition to DSBs via catalytic inhibition of telomerase. Reduces the processivity of telomerase by displacing active telomerase from DNA [...] (463 aa)
DBF4DBF4 zinc finger. (675 aa)
KREMEN2Kremen protein; Receptor for Dickkopf proteins. Cooperates with DKK1/2 to inhibit Wnt/beta-catenin signaling by promoting the endocytosis of Wnt receptors LRP5 and LRP6. (462 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (419 aa)
RFC3Replication factor C subunit 3. (220 aa)
RPA2Replication protein A2. (270 aa)
MCMBPMinichromosome maintenance complex binding protein. (643 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
MAML1Mastermind like transcriptional coactivator 1. (794 aa)
EXD2Exonuclease 3'-5' domain containing 2. (619 aa)
CHTF18Chromosome transmission fidelity factor 18. (988 aa)
MCM2DNA helicase; Belongs to the MCM family. (898 aa)
RMI1RecQ mediated genome instability 1. (617 aa)
UBE2TUbiquitin conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (205 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (579 aa)
TDRD3Tudor domain containing 3. (692 aa)
FBH1F-box DNA helicase 1. (1012 aa)
RAD51BRAD51 paralog B. (258 aa)
ATMSerine-protein kinase ATM; Serine/threonine protein kinase which activates checkpoint signaling upon double strand breaks (DSBs), apoptosis and genotoxic stresses such as ionizing ultraviolet A light (UVA), thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at double strand breaks (DSBs), thereby regulating DNA damage response mechanism. Also plays a role in pre-B cell allelic exclusion, a process leading to expression of a single immunoglobulin heavy chain allele to enforce clonality and mo [...] (3031 aa)
MSH3MutS homolog 3. (1047 aa)
RFC4Replication factor C subunit 4. (363 aa)
BARD1BRCA1 associated RING domain 1. (662 aa)
ClspnUncharacterized protein. (1330 aa)
BRIP1BRCA1 interacting protein C-terminal helicase 1. (971 aa)
ATAD5ATPase family AAA domain containing 5. (1831 aa)
FAAP24FA core complex associated protein 24. (215 aa)
REV1DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1251 aa)
FANCGFA complementation group G. (626 aa)
XRCC2X-ray repair cross complementing 2. (280 aa)
RFC2Replication factor C subunit 2. (352 aa)
CDC7Cell division cycle 7. (560 aa)
FAN1Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (987 aa)
Brca1Uncharacterized protein. (79 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2283 aa)
HELBDNA helicase B. (1063 aa)
NBNNibrin; Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double- strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. (751 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
DCLRE1ADNA cross-link repair 1A. (913 aa)
DMC1Meiotic recombination protein; May participate in meiotic recombination, specifically in homologous strand assimilation, which is required for the resolution of meiotic double-strand breaks; Belongs to the RecA family. DMC1 subfamily. (340 aa)
MSH2DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (934 aa)
Rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1246 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (706 aa)
H0VSI3_CAVPODNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (677 aa)
ORC3Origin recognition complex subunit 3. (710 aa)
MCPH1Uncharacterized protein. (786 aa)
FANCLFA complementation group L. (355 aa)
RECQL4RecQ like helicase 4. (1226 aa)
Prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (419 aa)
FANCFFA complementation group F. (322 aa)
XRCC3DNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA, thought to repair chromosomal fragmentation, translocations and deletions; Belongs to the RecA family. RAD51 subfamily. (338 aa)
H0VYV4_CAVPOUncharacterized protein. (260 aa)
RAD9BCell cycle checkpoint control protein; Belongs to the rad9 family. (401 aa)
RFC5Replication factor C subunit 5. (340 aa)
MAD2L2Mitotic arrest deficient 2 like 2. (211 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
MCM5DNA helicase; Belongs to the MCM family. (731 aa)
REV3LREV3 like, DNA directed polymerase zeta catalytic subunit. (2940 aa)
GINS2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (185 aa)
CDT1Chromatin licensing and DNA replication factor 1. (549 aa)
EME1Essential meiotic structure-specific endonuclease 1. (578 aa)
Slx1aStructure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. Has a preference for 5'-flap structures, and promotes symmetrical cleavage of static and migrating Holliday junctions (HJs). Resolves HJs by generating two pairs of ligatable, nicked duplex products. (266 aa)
HUS1Checkpoint protein; Belongs to the HUS1 family. (282 aa)
MLH3MutL homolog 3. (1455 aa)
POLD1DNA polymerase. (1134 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (116 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (989 aa)
Pold4Uncharacterized protein. (107 aa)
POLE3DNA polymerase epsilon 3, accessory subunit. (147 aa)
GINS4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
BivmUncharacterized protein. (503 aa)
DNA2DNA replication helicase/nuclease 2. (1021 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1738 aa)
RAD1RAD1 checkpoint DNA exonuclease. (282 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (916 aa)
CenpxUncharacterized protein. (79 aa)
PMS1PMS1 homolog 1, mismatch repair system component. (930 aa)
TIMELESSTimeless circadian regulator. (1239 aa)
ORC5Origin recognition complex subunit 5. (414 aa)
RAD9ACell cycle checkpoint control protein; Belongs to the rad9 family. (384 aa)
ANKRD12Ankyrin repeat domain 12. (2046 aa)
GINS3GINS complex subunit 3. (216 aa)
RHNO1RAD9-HUS1-RAD1 interacting nuclear orphan 1. (233 aa)
CDC45Cell division cycle 45. (566 aa)
Tm4sf19Uncharacterized protein. (232 aa)
LOC100717396Uncharacterized protein. (1249 aa)
RPA3Replication protein A3. (121 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1392 aa)
Mcm8MCM domain-containing protein; Belongs to the MCM family. (833 aa)
POLHDNA polymerase eta. (712 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (371 aa)
Rchy1Uncharacterized protein. (171 aa)
PWWP2APWWP domain containing 2A. (722 aa)
RMI2RecQ mediated genome instability 2. (147 aa)
NUTF2Nuclear transport factor 2. (127 aa)
POLIDNA polymerase iota. (662 aa)
PIEZO1Piezo-type mechanosensitive ion channel component. (2499 aa)
ERCC1ERCC excision repair 1, endonuclease non-catalytic subunit. (300 aa)
RAD51DDNA repair protein; Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents; Belongs to the RecA family. RAD51 subfamily. (329 aa)
FANCCFanconi anemia group C protein homolog; DNA repair protein that may operate in a postreplication repair or a cell cycle checkpoint function. May be implicated in interstrand DNA cross-link repair and in the maintenance of normal chromosome stability. Upon IFNG induction, may facilitate STAT1 activation by recruiting STAT1 to IFNGR1. (569 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
TOP3ADNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (1027 aa)
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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