5 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ahr	Uncharacterized protein. (832 aa)
	Ahrr	Uncharacterized protein. (654 aa)
	AIP	Aryl hydrocarbon receptor interacting protein. (330 aa)
	AIPL1	Aryl hydrocarbon receptor interacting protein like 1. (328 aa)
	ENSCPOP00000027557	BHLH domain-containing protein. (60 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIP	AIPL1	ENSCPOP00000015770	ENSCPOP00000026939	Aryl hydrocarbon receptor interacting protein.	Aryl hydrocarbon receptor interacting protein like 1.	0.910
AIP	Ahr	ENSCPOP00000015770	ENSCPOP00000004936	Aryl hydrocarbon receptor interacting protein.	Uncharacterized protein.	0.996
AIP	Ahrr	ENSCPOP00000015770	ENSCPOP00000005402	Aryl hydrocarbon receptor interacting protein.	Uncharacterized protein.	0.908
AIPL1	AIP	ENSCPOP00000026939	ENSCPOP00000015770	Aryl hydrocarbon receptor interacting protein like 1.	Aryl hydrocarbon receptor interacting protein.	0.910
AIPL1	Ahr	ENSCPOP00000026939	ENSCPOP00000004936	Aryl hydrocarbon receptor interacting protein like 1.	Uncharacterized protein.	0.982
AIPL1	Ahrr	ENSCPOP00000026939	ENSCPOP00000005402	Aryl hydrocarbon receptor interacting protein like 1.	Uncharacterized protein.	0.903
Ahr	AIP	ENSCPOP00000004936	ENSCPOP00000015770	Uncharacterized protein.	Aryl hydrocarbon receptor interacting protein.	0.996
Ahr	AIPL1	ENSCPOP00000004936	ENSCPOP00000026939	Uncharacterized protein.	Aryl hydrocarbon receptor interacting protein like 1.	0.982
Ahr	ENSCPOP00000027557	ENSCPOP00000004936	ENSCPOP00000027557	Uncharacterized protein.	BHLH domain-containing protein.	0.841
Ahrr	AIP	ENSCPOP00000005402	ENSCPOP00000015770	Uncharacterized protein.	Aryl hydrocarbon receptor interacting protein.	0.908
Ahrr	AIPL1	ENSCPOP00000005402	ENSCPOP00000026939	Uncharacterized protein.	Aryl hydrocarbon receptor interacting protein like 1.	0.903
Ahrr	ENSCPOP00000027557	ENSCPOP00000005402	ENSCPOP00000027557	Uncharacterized protein.	BHLH domain-containing protein.	0.841
ENSCPOP00000027557	Ahr	ENSCPOP00000027557	ENSCPOP00000004936	BHLH domain-containing protein.	Uncharacterized protein.	0.841
ENSCPOP00000027557	Ahrr	ENSCPOP00000027557	ENSCPOP00000005402	BHLH domain-containing protein.	Uncharacterized protein.	0.841