(35 nodes) Cytosolic ribosome network (Cavia porcellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RPS13	Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (132 aa)
	RPS12	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	RPS21	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (86 aa)
	RPL4	Ribosomal protein L4. (415 aa)
	RPL10A	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
	RPLP2	Ribosomal protein lateral stalk subunit P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	RPSA	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteri [...] (295 aa)
	RACK1	Receptor for activated C kinase 1. (317 aa)
	RPL3	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (403 aa)
	RPL6	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (291 aa)
	RPS11	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (158 aa)
	RPS3A	40S ribosomal protein S3a; May play a role during erythropoiesis through regulation of transcription factor DDIT3. (264 aa)
	EEF2	Eukaryotic translation elongation factor 2. (815 aa)
	RPL19	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (196 aa)
	Rpl22	Uncharacterized protein. (129 aa)
	RPS9	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	RPL7	Ribosomal protein L7. (210 aa)
	RPS28	Ribosomal protein S28. (69 aa)
	RPS14	Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPL13	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (211 aa)
	RPL32	Ribosomal protein L32. (135 aa)
	H0W9V1_CAVPO	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (123 aa)
	Rps26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	RPS15A	Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	RPL14	Ribosomal_L14e domain-containing protein. (228 aa)
	ENSCPOP00000023551	Uncharacterized protein. (111 aa)
	Rps29	Uncharacterized protein. (56 aa)
	RPL34	Uncharacterized protein. (117 aa)
	RPL5	Ribosomal_L18_c domain-containing protein. (297 aa)
	RPL38	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	RPL29	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (180 aa)
	RPL30	Ribosomal_L7Ae domain-containing protein. (115 aa)
	RPS19	Ribosomal protein S19. (176 aa)
	RPL7A	Ribosomal protein L7a. (260 aa)
	RPL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF2	ENSCPOP00000023551	ENSCPOP00000014155	ENSCPOP00000023551	Eukaryotic translation elongation factor 2.	Uncharacterized protein.	0.996
EEF2	H0W9V1_CAVPO	ENSCPOP00000014155	ENSCPOP00000019761	Eukaryotic translation elongation factor 2.	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family.	0.998
EEF2	RACK1	ENSCPOP00000014155	ENSCPOP00000007831	Eukaryotic translation elongation factor 2.	Receptor for activated C kinase 1.	0.999
EEF2	RPL10A	ENSCPOP00000014155	ENSCPOP00000005024	Eukaryotic translation elongation factor 2.	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.	0.983
EEF2	RPL13	ENSCPOP00000014155	ENSCPOP00000018440	Eukaryotic translation elongation factor 2.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
EEF2	RPL14	ENSCPOP00000014155	ENSCPOP00000022192	Eukaryotic translation elongation factor 2.	Ribosomal_L14e domain-containing protein.	0.998
EEF2	RPL15	ENSCPOP00000014155	ENSCPOP00000032580	Eukaryotic translation elongation factor 2.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
EEF2	RPL19	ENSCPOP00000014155	ENSCPOP00000014508	Eukaryotic translation elongation factor 2.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.998
EEF2	RPL29	ENSCPOP00000014155	ENSCPOP00000028542	Eukaryotic translation elongation factor 2.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.996
EEF2	RPL3	ENSCPOP00000014155	ENSCPOP00000009011	Eukaryotic translation elongation factor 2.	Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.992
EEF2	RPL30	ENSCPOP00000014155	ENSCPOP00000029293	Eukaryotic translation elongation factor 2.	Ribosomal_L7Ae domain-containing protein.	0.998
EEF2	RPL32	ENSCPOP00000014155	ENSCPOP00000019025	Eukaryotic translation elongation factor 2.	Ribosomal protein L32.	0.998
EEF2	RPL34	ENSCPOP00000014155	ENSCPOP00000026128	Eukaryotic translation elongation factor 2.	Uncharacterized protein.	0.997
EEF2	RPL38	ENSCPOP00000014155	ENSCPOP00000027290	Eukaryotic translation elongation factor 2.	Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.997
EEF2	RPL4	ENSCPOP00000014155	ENSCPOP00000002765	Eukaryotic translation elongation factor 2.	Ribosomal protein L4.	0.999
EEF2	RPL5	ENSCPOP00000014155	ENSCPOP00000026749	Eukaryotic translation elongation factor 2.	Ribosomal_L18_c domain-containing protein.	0.999
EEF2	RPL6	ENSCPOP00000014155	ENSCPOP00000012178	Eukaryotic translation elongation factor 2.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
EEF2	RPL7	ENSCPOP00000014155	ENSCPOP00000016758	Eukaryotic translation elongation factor 2.	Ribosomal protein L7.	0.990
EEF2	RPL7A	ENSCPOP00000014155	ENSCPOP00000030687	Eukaryotic translation elongation factor 2.	Ribosomal protein L7a.	0.999
EEF2	RPLP2	ENSCPOP00000014155	ENSCPOP00000005286	Eukaryotic translation elongation factor 2.	Ribosomal protein lateral stalk subunit P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.985