11 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CNOT8	CCR4-NOT transcription complex subunit 8. (292 aa)
	CNOT2	CCR4-NOT transcription complex subunit 2. (544 aa)
	CNOT10	CCR4-NOT transcription complex subunit 10. (754 aa)
	CNOT6L	CCR4-NOT transcription complex subunit 6 like. (462 aa)
	CNOT1	CCR4-NOT transcription complex subunit 1. (2294 aa)
	CNOT7	CCR4-NOT transcription complex subunit 7. (285 aa)
	CNOT3	CCR4-NOT transcription complex subunit 3. (751 aa)
	CNOT6	CCR4-NOT transcription complex subunit 6. (534 aa)
	CNOT9	CCR4-NOT transcription complex subunit 9. (299 aa)
	CNOT11	CCR4-NOT transcription complex subunit 11. (515 aa)
	CNOT4	CCR4-NOT transcription complex subunit 4. (710 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT1	CNOT10	ENSCPOP00000011726	ENSCPOP00000005358	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 10.	0.999
CNOT1	CNOT11	ENSCPOP00000011726	ENSCPOP00000032144	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 11.	0.999
CNOT1	CNOT2	ENSCPOP00000011726	ENSCPOP00000004286	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 2.	0.999
CNOT1	CNOT3	ENSCPOP00000011726	ENSCPOP00000024185	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 3.	0.999
CNOT1	CNOT4	ENSCPOP00000011726	ENSCPOP00000032228	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 4.	0.998
CNOT1	CNOT6	ENSCPOP00000011726	ENSCPOP00000025960	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 6.	0.987
CNOT1	CNOT6L	ENSCPOP00000011726	ENSCPOP00000009284	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 6 like.	0.996
CNOT1	CNOT7	ENSCPOP00000011726	ENSCPOP00000023165	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 7.	0.999
CNOT1	CNOT8	ENSCPOP00000011726	ENSCPOP00000003131	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 8.	0.990
CNOT1	CNOT9	ENSCPOP00000011726	ENSCPOP00000026183	CCR4-NOT transcription complex subunit 1.	CCR4-NOT transcription complex subunit 9.	0.999
CNOT10	CNOT1	ENSCPOP00000005358	ENSCPOP00000011726	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 1.	0.999
CNOT10	CNOT11	ENSCPOP00000005358	ENSCPOP00000032144	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 11.	0.999
CNOT10	CNOT2	ENSCPOP00000005358	ENSCPOP00000004286	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 2.	0.980
CNOT10	CNOT3	ENSCPOP00000005358	ENSCPOP00000024185	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 3.	0.950
CNOT10	CNOT4	ENSCPOP00000005358	ENSCPOP00000032228	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 4.	0.964
CNOT10	CNOT6	ENSCPOP00000005358	ENSCPOP00000025960	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 6.	0.953
CNOT10	CNOT6L	ENSCPOP00000005358	ENSCPOP00000009284	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 6 like.	0.955
CNOT10	CNOT7	ENSCPOP00000005358	ENSCPOP00000023165	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 7.	0.970
CNOT10	CNOT8	ENSCPOP00000005358	ENSCPOP00000003131	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 8.	0.947
CNOT10	CNOT9	ENSCPOP00000005358	ENSCPOP00000026183	CCR4-NOT transcription complex subunit 10.	CCR4-NOT transcription complex subunit 9.	0.980