(20 nodes) Cytoplasmic dynein complex network (Cavia porcellus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DYNC2LI1	Dynein cytoplasmic 2 light intermediate chain 1. (351 aa)
	DYNC1H1	Dynein cytoplasmic 1 heavy chain 1. (4637 aa)
	DYNLT1	Dynein light chain Tctex-type 1. (113 aa)
	H0VIB7_CAVPO	Uncharacterized protein. (439 aa)
	DNHD1	Dynein heavy chain domain 1. (4706 aa)
	DYNLRB1	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. (104 aa)
	TCTEX1D1	Tctex1 domain containing 1. (178 aa)
	H0VQE0_CAVPO	Uncharacterized protein. (312 aa)
	DYNC1I2	Dynein cytoplasmic 1 intermediate chain 2. (638 aa)
	TCTEX1D4	Tctex1 domain containing 4. (224 aa)
	DYNLRB2	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. (96 aa)
	DYNLL1	Dynein light chain. (89 aa)
	TCTE3	T-complex-associated-testis-expressed 3. (196 aa)
	DYNC2H1	Dynein cytoplasmic 2 heavy chain 1. (4253 aa)
	DYNLL2	Dynein light chain. (89 aa)
	ENSCPOP00000028975	Uncharacterized protein. (138 aa)
	DYNLT3	Dynein light chain Tctex-type 3. (116 aa)
	WDR34	WD repeat domain 34. (534 aa)
	WDR60	WD repeat domain 60. (986 aa)
	DYNC1LI2	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (492 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNHD1	DYNC1I2	ENSCPOP00000011347	ENSCPOP00000013349	Dynein heavy chain domain 1.	Dynein cytoplasmic 1 intermediate chain 2.	0.612
DNHD1	DYNC1LI2	ENSCPOP00000011347	ENSCPOP00000032765	Dynein heavy chain domain 1.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.672
DNHD1	DYNC2LI1	ENSCPOP00000011347	ENSCPOP00000000176	Dynein heavy chain domain 1.	Dynein cytoplasmic 2 light intermediate chain 1.	0.672
DNHD1	DYNLL1	ENSCPOP00000011347	ENSCPOP00000025486	Dynein heavy chain domain 1.	Dynein light chain.	0.747
DNHD1	DYNLL2	ENSCPOP00000011347	ENSCPOP00000028138	Dynein heavy chain domain 1.	Dynein light chain.	0.764
DNHD1	DYNLRB1	ENSCPOP00000011347	ENSCPOP00000012432	Dynein heavy chain domain 1.	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	0.719
DNHD1	DYNLRB2	ENSCPOP00000011347	ENSCPOP00000019983	Dynein heavy chain domain 1.	Dynein light chain roadblock; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.	0.719
DNHD1	DYNLT1	ENSCPOP00000011347	ENSCPOP00000003876	Dynein heavy chain domain 1.	Dynein light chain Tctex-type 1.	0.726
DNHD1	DYNLT3	ENSCPOP00000011347	ENSCPOP00000029153	Dynein heavy chain domain 1.	Dynein light chain Tctex-type 3.	0.726
DNHD1	ENSCPOP00000028975	ENSCPOP00000011347	ENSCPOP00000028975	Dynein heavy chain domain 1.	Uncharacterized protein.	0.484
DNHD1	H0VIB7_CAVPO	ENSCPOP00000011347	ENSCPOP00000009936	Dynein heavy chain domain 1.	Uncharacterized protein.	0.612
DNHD1	H0VQE0_CAVPO	ENSCPOP00000011347	ENSCPOP00000012754	Dynein heavy chain domain 1.	Uncharacterized protein.	0.627
DNHD1	TCTE3	ENSCPOP00000011347	ENSCPOP00000027613	Dynein heavy chain domain 1.	T-complex-associated-testis-expressed 3.	0.490
DNHD1	TCTEX1D1	ENSCPOP00000011347	ENSCPOP00000012753	Dynein heavy chain domain 1.	Tctex1 domain containing 1.	0.513
DNHD1	TCTEX1D4	ENSCPOP00000011347	ENSCPOP00000014526	Dynein heavy chain domain 1.	Tctex1 domain containing 4.	0.512
DNHD1	WDR34	ENSCPOP00000011347	ENSCPOP00000031300	Dynein heavy chain domain 1.	WD repeat domain 34.	0.612
DNHD1	WDR60	ENSCPOP00000011347	ENSCPOP00000031501	Dynein heavy chain domain 1.	WD repeat domain 60.	0.612
DYNC1H1	DYNC1I2	ENSCPOP00000003676	ENSCPOP00000013349	Dynein cytoplasmic 1 heavy chain 1.	Dynein cytoplasmic 1 intermediate chain 2.	0.998
DYNC1H1	DYNC1LI2	ENSCPOP00000003676	ENSCPOP00000032765	Dynein cytoplasmic 1 heavy chain 1.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.999
DYNC1H1	DYNC2H1	ENSCPOP00000003676	ENSCPOP00000027787	Dynein cytoplasmic 1 heavy chain 1.	Dynein cytoplasmic 2 heavy chain 1.	0.862