20 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ZNF213	Zinc finger protein 213. (470 aa)
	ZSCAN29	Zinc finger and SCAN domain containing 29. (853 aa)
	ZKSCAN8	Zinc finger with KRAB and SCAN domains 8. (576 aa)
	ZNF483	Zinc finger protein 483. (672 aa)
	ZNF397	Zinc finger protein 397. (535 aa)
	PGBD5	PiggyBac transposable element derived 5. (519 aa)
	ZNF394	Zinc finger protein 394. (546 aa)
	ZSCAN9	Zinc finger and SCAN domain containing 9. (404 aa)
	Znf197	Uncharacterized protein. (263 aa)
	ZNF24	Zinc finger protein 24. (368 aa)
	ZSCAN21	Zinc finger and SCAN domain containing 21. (476 aa)
	ZSCAN20	Zinc finger and SCAN domain containing 20. (1021 aa)
	SCAND1	SCAN domain containing 1. (264 aa)
	ZNF287	Zinc finger protein 287. (753 aa)
	ZNF232	Zinc finger protein 232. (414 aa)
	ENSCPOP00000025127	Uncharacterized protein. (465 aa)
	ENSCPOP00000025233	Uncharacterized protein. (518 aa)
	Pgbd1	DDE_Tnp_1_7 domain-containing protein. (364 aa)
	ZNF446	Zinc finger protein 446. (370 aa)
	ZNF174	Zinc finger protein 174. (408 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCPOP00000025127	ZNF232	ENSCPOP00000025127	ENSCPOP00000023980	Uncharacterized protein.	Zinc finger protein 232.	0.403
ENSCPOP00000025127	ZNF446	ENSCPOP00000025127	ENSCPOP00000027552	Uncharacterized protein.	Zinc finger protein 446.	0.455
ENSCPOP00000025233	ZNF174	ENSCPOP00000025233	ENSCPOP00000028438	Uncharacterized protein.	Zinc finger protein 174.	0.409
ENSCPOP00000025233	ZNF232	ENSCPOP00000025233	ENSCPOP00000023980	Uncharacterized protein.	Zinc finger protein 232.	0.407
ENSCPOP00000025233	ZNF446	ENSCPOP00000025233	ENSCPOP00000027552	Uncharacterized protein.	Zinc finger protein 446.	0.455
PGBD5	Pgbd1	ENSCPOP00000009464	ENSCPOP00000025948	PiggyBac transposable element derived 5.	DDE_Tnp_1_7 domain-containing protein.	0.854
Pgbd1	PGBD5	ENSCPOP00000025948	ENSCPOP00000009464	DDE_Tnp_1_7 domain-containing protein.	PiggyBac transposable element derived 5.	0.854
Pgbd1	SCAND1	ENSCPOP00000025948	ENSCPOP00000020587	DDE_Tnp_1_7 domain-containing protein.	SCAN domain containing 1.	0.762
Pgbd1	ZKSCAN8	ENSCPOP00000025948	ENSCPOP00000001705	DDE_Tnp_1_7 domain-containing protein.	Zinc finger with KRAB and SCAN domains 8.	0.495
Pgbd1	ZNF174	ENSCPOP00000025948	ENSCPOP00000028438	DDE_Tnp_1_7 domain-containing protein.	Zinc finger protein 174.	0.541
Pgbd1	ZNF213	ENSCPOP00000025948	ENSCPOP00000000690	DDE_Tnp_1_7 domain-containing protein.	Zinc finger protein 213.	0.660
Pgbd1	ZNF232	ENSCPOP00000025948	ENSCPOP00000023980	DDE_Tnp_1_7 domain-containing protein.	Zinc finger protein 232.	0.540
Pgbd1	ZNF397	ENSCPOP00000025948	ENSCPOP00000005916	DDE_Tnp_1_7 domain-containing protein.	Zinc finger protein 397.	0.587
Pgbd1	ZNF446	ENSCPOP00000025948	ENSCPOP00000027552	DDE_Tnp_1_7 domain-containing protein.	Zinc finger protein 446.	0.756
Pgbd1	ZSCAN20	ENSCPOP00000025948	ENSCPOP00000014981	DDE_Tnp_1_7 domain-containing protein.	Zinc finger and SCAN domain containing 20.	0.661
Pgbd1	ZSCAN29	ENSCPOP00000025948	ENSCPOP00000001613	DDE_Tnp_1_7 domain-containing protein.	Zinc finger and SCAN domain containing 29.	0.727
SCAND1	Pgbd1	ENSCPOP00000020587	ENSCPOP00000025948	SCAN domain containing 1.	DDE_Tnp_1_7 domain-containing protein.	0.762
SCAND1	ZNF174	ENSCPOP00000020587	ENSCPOP00000028438	SCAN domain containing 1.	Zinc finger protein 174.	0.521
SCAND1	ZNF213	ENSCPOP00000020587	ENSCPOP00000000690	SCAN domain containing 1.	Zinc finger protein 213.	0.403
SCAND1	ZNF232	ENSCPOP00000020587	ENSCPOP00000023980	SCAN domain containing 1.	Zinc finger protein 232.	0.541