5 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (232 aa)
	Rps27a	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...] (156 aa)
	TRAF7	TNF receptor associated factor 7. (670 aa)
	H0W3J0_CAVPO	Uncharacterized protein. (540 aa)
	MIB2	Mindbomb E3 ubiquitin protein ligase 2. (887 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0W3J0_CAVPO	MIB2	ENSCPOP00000017537	ENSCPOP00000020436	Uncharacterized protein.	Mindbomb E3 ubiquitin protein ligase 2.	0.911
H0W3J0_CAVPO	Rps27a	ENSCPOP00000017537	ENSCPOP00000005248	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	0.998
H0W3J0_CAVPO	TRAF7	ENSCPOP00000017537	ENSCPOP00000010651	Uncharacterized protein.	TNF receptor associated factor 7.	0.987
H0W3J0_CAVPO	UBA52	ENSCPOP00000017537	ENSCPOP00000000308	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
MIB2	H0W3J0_CAVPO	ENSCPOP00000020436	ENSCPOP00000017537	Mindbomb E3 ubiquitin protein ligase 2.	Uncharacterized protein.	0.911
MIB2	Rps27a	ENSCPOP00000020436	ENSCPOP00000005248	Mindbomb E3 ubiquitin protein ligase 2.	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	0.952
MIB2	TRAF7	ENSCPOP00000020436	ENSCPOP00000010651	Mindbomb E3 ubiquitin protein ligase 2.	TNF receptor associated factor 7.	0.990
MIB2	UBA52	ENSCPOP00000020436	ENSCPOP00000000308	Mindbomb E3 ubiquitin protein ligase 2.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.992
Rps27a	H0W3J0_CAVPO	ENSCPOP00000005248	ENSCPOP00000017537	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	Uncharacterized protein.	0.998
Rps27a	MIB2	ENSCPOP00000005248	ENSCPOP00000020436	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	Mindbomb E3 ubiquitin protein ligase 2.	0.952
Rps27a	TRAF7	ENSCPOP00000005248	ENSCPOP00000010651	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	TNF receptor associated factor 7.	0.915
Rps27a	UBA52	ENSCPOP00000005248	ENSCPOP00000000308	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.995
TRAF7	H0W3J0_CAVPO	ENSCPOP00000010651	ENSCPOP00000017537	TNF receptor associated factor 7.	Uncharacterized protein.	0.987
TRAF7	MIB2	ENSCPOP00000010651	ENSCPOP00000020436	TNF receptor associated factor 7.	Mindbomb E3 ubiquitin protein ligase 2.	0.990
TRAF7	Rps27a	ENSCPOP00000010651	ENSCPOP00000005248	TNF receptor associated factor 7.	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	0.915
TRAF7	UBA52	ENSCPOP00000010651	ENSCPOP00000000308	TNF receptor associated factor 7.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.991
UBA52	H0W3J0_CAVPO	ENSCPOP00000000308	ENSCPOP00000017537	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Uncharacterized protein.	0.999
UBA52	MIB2	ENSCPOP00000000308	ENSCPOP00000020436	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Mindbomb E3 ubiquitin protein ligase 2.	0.992
UBA52	Rps27a	ENSCPOP00000000308	ENSCPOP00000005248	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin-40S ribosomal protein S27a; [Ubiquitin]: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be i [...]	0.995
UBA52	TRAF7	ENSCPOP00000000308	ENSCPOP00000010651	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor associated factor 7.	0.991