12 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ICAM2	Intercellular adhesion molecule 2. (278 aa)
	FLOT1	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (427 aa)
	SCIMP	SLP adaptor and CSK interacting membrane protein. (153 aa)
	Bst1	Uncharacterized protein. (288 aa)
	LOC100735470	Uncharacterized protein. (296 aa)
	FLOT2	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily. (428 aa)
	PIP5K1B	Phosphatidylinositol-4-phosphate 5-kinase type 1 beta. (488 aa)
	PIP5K1C	Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma. (689 aa)
	MYH9	Myosin heavy chain 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1960 aa)
	EZR	Ezrin. (586 aa)
	Selplg	Uncharacterized protein. (372 aa)
	MSN	Moesin. (577 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EZR	ICAM2	ENSCPOP00000032958	ENSCPOP00000023966	Ezrin.	Intercellular adhesion molecule 2.	0.778
EZR	MSN	ENSCPOP00000032958	ENSCPOP00000031240	Ezrin.	Moesin.	0.996
EZR	MYH9	ENSCPOP00000032958	ENSCPOP00000000303	Ezrin.	Myosin heavy chain 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.679
EZR	Selplg	ENSCPOP00000032958	ENSCPOP00000028397	Ezrin.	Uncharacterized protein.	0.626
FLOT1	FLOT2	ENSCPOP00000023717	ENSCPOP00000013787	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.965
FLOT2	FLOT1	ENSCPOP00000013787	ENSCPOP00000023717	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.965
ICAM2	EZR	ENSCPOP00000023966	ENSCPOP00000032958	Intercellular adhesion molecule 2.	Ezrin.	0.778
ICAM2	MSN	ENSCPOP00000023966	ENSCPOP00000031240	Intercellular adhesion molecule 2.	Moesin.	0.783
MSN	EZR	ENSCPOP00000031240	ENSCPOP00000032958	Moesin.	Ezrin.	0.996
MSN	ICAM2	ENSCPOP00000031240	ENSCPOP00000023966	Moesin.	Intercellular adhesion molecule 2.	0.783
MSN	MYH9	ENSCPOP00000031240	ENSCPOP00000000303	Moesin.	Myosin heavy chain 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.713
MSN	Selplg	ENSCPOP00000031240	ENSCPOP00000028397	Moesin.	Uncharacterized protein.	0.679
MYH9	EZR	ENSCPOP00000000303	ENSCPOP00000032958	Myosin heavy chain 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Ezrin.	0.679
MYH9	MSN	ENSCPOP00000000303	ENSCPOP00000031240	Myosin heavy chain 9; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Moesin.	0.713
PIP5K1B	PIP5K1C	ENSCPOP00000003868	ENSCPOP00000001759	Phosphatidylinositol-4-phosphate 5-kinase type 1 beta.	Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma.	0.817
PIP5K1C	PIP5K1B	ENSCPOP00000001759	ENSCPOP00000003868	Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma.	Phosphatidylinositol-4-phosphate 5-kinase type 1 beta.	0.817
Selplg	EZR	ENSCPOP00000028397	ENSCPOP00000032958	Uncharacterized protein.	Ezrin.	0.626
Selplg	MSN	ENSCPOP00000028397	ENSCPOP00000031240	Uncharacterized protein.	Moesin.	0.679