STRINGSTRING
POLG2 POLG2 RBM48 RBM48 MCM10 MCM10 ATRX ATRX TBRG1 TBRG1 SAMHD1 SAMHD1 GMNN GMNN MUS81 MUS81 DNAJC2 DNAJC2 PIF1 PIF1 DNAJA3 DNAJA3 ORC4 ORC4 RRM2 RRM2 RFC3 RFC3 RPA2 RPA2 MCMBP MCMBP TOP1 TOP1 H0VDT0_CAVPO H0VDT0_CAVPO PCNA PCNA MAML1 MAML1 NOC3L NOC3L EXD2 EXD2 NFIA NFIA MCM2 MCM2 RMI1 RMI1 CDC6 CDC6 Cdk9 Cdk9 H0VGS2_CAVPO H0VGS2_CAVPO KIN KIN POLB POLB FBH1 FBH1 RFC4 RFC4 H0VJ90_CAVPO H0VJ90_CAVPO CHAF1A CHAF1A WDR18 WDR18 ATAD5 ATAD5 BAZ1A BAZ1A SMARCAL1 SMARCAL1 RBMS1 RBMS1 ING4 ING4 RFC2 RFC2 ETAA1 ETAA1 WRNIP1 WRNIP1 LIG3 LIG3 RRM1 RRM1 Ccne2 Ccne2 POLE POLE HELB HELB RAD51 RAD51 LIG4 LIG4 Rtel1 Rtel1 MRE11 MRE11 SDE2 SDE2 FHIT FHIT H0VSI3_CAVPO H0VSI3_CAVPO ORC3 ORC3 DDX21 DDX21 RECQL4 RECQL4 TREX1 TREX1 Prim1 Prim1 UPF1 UPF1 RECQL RECQL RFC5 RFC5 Rnaseh1 Rnaseh1 NFIX NFIX POLD2 POLD2 MCM5 MCM5 DERPC DERPC GINS2 GINS2 CDT1 CDT1 EME1 EME1 NRM NRM NUCKS1 NUCKS1 GMNC GMNC LOC100736130 LOC100736130 POLD1 POLD1 MCM7 MCM7 POLE4 POLE4 RECQL5 RECQL5 Pold4 Pold4 POLE3 POLE3 GINS4 GINS4 DNA2 DNA2 SLX4 SLX4 MMS22L MMS22L GEN1 GEN1 Cenpx Cenpx TIMELESS TIMELESS ORC5 ORC5 GINS3 GINS3 CDC45 CDC45 ENSCPOP00000025543 ENSCPOP00000025543 Tm4sf19 Tm4sf19 CENPS CENPS TK2 TK2 ZPR1 ZPR1 RBBP7 RBBP7 RPA1 RPA1 TIPIN TIPIN GINS1 GINS1 SSRP1 SSRP1 RFWD3 RFWD3 MCM3 MCM3 TWNK TWNK THOC1 THOC1 SRPK2 SRPK2 LRWD1 LRWD1 FANCM FANCM POLN POLN BLM BLM KAT7 KAT7 SIRT7 SIRT7 Pola2 Pola2 E4F1 E4F1 DDX50 DDX50 POLA1 POLA1 SUPT16H SUPT16H ALYREF ALYREF RPA3 RPA3 TOPBP1 TOPBP1 PRIMPOL PRIMPOL ENSCPOP00000027449 ENSCPOP00000027449 ZNF830 ZNF830 EME2 EME2 RRM2B RRM2B RTF2 RTF2 FAM111A FAM111A MGME1 MGME1 RMI2 RMI2 ENSCPOP00000030705 ENSCPOP00000030705 RNASEH2A RNASEH2A TOP1MT TOP1MT REPIN1 REPIN1 FEN1 FEN1 ING5 ING5 TONSL TONSL Pclaf Pclaf WRN WRN DDX23 DDX23 SSBP1 SSBP1 WDHD1 WDHD1 TRAIP TRAIP RPAIN RPAIN MCM4 MCM4 ORC6 ORC6 DDX11 DDX11 PRIM2 PRIM2 NFIB NFIB Lig1 Lig1 RFC1 RFC1 POLE2 POLE2 ORC2 ORC2 MCM6 MCM6 CCNE1 CCNE1 DONSON DONSON ORC1 ORC1 BRCA2 BRCA2 MCM9 MCM9 POLL POLL SIN3A SIN3A TTC38 TTC38 ATR ATR Pold3 Pold3 POLG POLG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
POLG2DNA polymerase gamma 2, accessory subunit. (482 aa)
RBM48RNA binding motif protein 48. (364 aa)
MCM10Minichromosome maintenance 10 replication initiation factor. (834 aa)
ATRXATRX chromatin remodeler. (2481 aa)
TBRG1Transforming growth factor beta regulator 1. (411 aa)
SAMHD1SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1. (526 aa)
GMNNGeminin DNA replication inhibitor. (209 aa)
MUS81MUS81 structure-specific endonuclease subunit. (562 aa)
DNAJC2DnaJ heat shock protein family (Hsp40) member C2. (604 aa)
PIF1ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. Efficiently unwinds G-quadruplex (G4) DNA structures and forked RNA-DNA hybrids. Resolves G4 structures, preventing replication pausing and double-strand breaks (DSBs) at G4 motifs. Involved in the maintenance of telomeric DNA. Inhibits telomere elongation, de novo telomere formation and telomere addition to DSBs via catalytic inhibition of telomerase. Reduces the processivity of telomerase by displacing active telomerase from DNA [...] (463 aa)
DNAJA3DnaJ heat shock protein family (Hsp40) member A3. (479 aa)
ORC4Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (419 aa)
RRM2Ribonucleotide reductase regulatory subunit M2. (389 aa)
RFC3Replication factor C subunit 3. (220 aa)
RPA2Replication protein A2. (270 aa)
MCMBPMinichromosome maintenance complex binding protein. (643 aa)
TOP1DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (768 aa)
H0VDT0_CAVPOProtein kinase domain-containing protein. (337 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (261 aa)
MAML1Mastermind like transcriptional coactivator 1. (794 aa)
NOC3LNucleolar complex protein 3 homolog. (800 aa)
EXD2Exonuclease 3'-5' domain containing 2. (619 aa)
NFIANuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (509 aa)
MCM2DNA helicase; Belongs to the MCM family. (898 aa)
RMI1RecQ mediated genome instability 1. (617 aa)
CDC6Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family. (579 aa)
Cdk9Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (372 aa)
H0VGS2_CAVPOUncharacterized protein. (611 aa)
KINKin17 DNA and RNA binding protein. (393 aa)
POLBDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (340 aa)
FBH1F-box DNA helicase 1. (1012 aa)
RFC4Replication factor C subunit 4. (363 aa)
H0VJ90_CAVPOUncharacterized protein. (425 aa)
CHAF1AChromatin assembly factor 1 subunit A. (949 aa)
WDR18WD repeat domain 18. (429 aa)
ATAD5ATPase family AAA domain containing 5. (1831 aa)
BAZ1ABromodomain adjacent to zinc finger domain 1A. (1523 aa)
SMARCAL1SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (938 aa)
RBMS1RNA binding motif single stranded interacting protein 1. (404 aa)
ING4Inhibitor of growth protein. (245 aa)
RFC2Replication factor C subunit 2. (352 aa)
ETAA1ETAA1 activator of ATR kinase. (866 aa)
WRNIP1WRN helicase interacting protein 1. (568 aa)
LIG3DNA ligase. (1012 aa)
RRM1Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (798 aa)
Ccne2Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (405 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2283 aa)
HELBDNA helicase B. (1063 aa)
RAD51DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...] (339 aa)
LIG4DNA ligase. (911 aa)
Rtel1Regulator of telomere elongation helicase 1; ATP-dependent DNA helicase implicated in telomere-length regulation, DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates. Also disassembles T loops and prevents telomere fragility by [...] (1246 aa)
MRE11Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (706 aa)
SDE2SDE2 telomere maintenance homolog. (453 aa)
FHITBis(5'-adenosyl)-triphosphatase. (150 aa)
H0VSI3_CAVPODNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (677 aa)
ORC3Origin recognition complex subunit 3. (710 aa)
DDX21DExD-box helicase 21. (797 aa)
RECQL4RecQ like helicase 4. (1226 aa)
TREX1Three prime repair exonuclease 1. (314 aa)
Prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (419 aa)
UPF1UPF1 RNA helicase and ATPase. (1109 aa)
RECQLATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (650 aa)
RFC5Replication factor C subunit 5. (340 aa)
Rnaseh1Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (294 aa)
NFIXNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (474 aa)
POLD2DNA polymerase delta 2, accessory subunit. (469 aa)
MCM5DNA helicase; Belongs to the MCM family. (731 aa)
DERPCDERPC proline and glycine rich nuclear protein. (531 aa)
GINS2DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (185 aa)
CDT1Chromatin licensing and DNA replication factor 1. (549 aa)
EME1Essential meiotic structure-specific endonuclease 1. (578 aa)
NRMNurim. (203 aa)
NUCKS1Nuclear casein kinase and cyclin dependent kinase substrate 1. (243 aa)
GMNCGeminin coiled-coil domain containing. (341 aa)
LOC100736130Uncharacterized protein. (287 aa)
POLD1DNA polymerase. (1134 aa)
MCM7DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...] (719 aa)
POLE4DNA polymerase epsilon 4, accessory subunit. (116 aa)
RECQL5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (989 aa)
Pold4Uncharacterized protein. (107 aa)
POLE3DNA polymerase epsilon 3, accessory subunit. (147 aa)
GINS4DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (223 aa)
DNA2DNA replication helicase/nuclease 2. (1021 aa)
SLX4SLX4 structure-specific endonuclease subunit. (1738 aa)
MMS22LMMS22 like, DNA repair protein. (1237 aa)
GEN1GEN1 Holliday junction 5' flap endonuclease. (916 aa)
CenpxUncharacterized protein. (79 aa)
TIMELESSTimeless circadian regulator. (1239 aa)
ORC5Origin recognition complex subunit 5. (414 aa)
GINS3GINS complex subunit 3. (216 aa)
CDC45Cell division cycle 45. (566 aa)
ENSCPOP00000025543AAA_12 domain-containing protein. (243 aa)
Tm4sf19Uncharacterized protein. (232 aa)
CENPSCentromere protein S. (135 aa)
TK2Thymidine kinase 2. (264 aa)
ZPR1ZPR1 zinc finger. (459 aa)
RBBP7RB binding protein 7, chromatin remodeling factor. (469 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (616 aa)
TIPINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (249 aa)
GINS1GINS complex subunit 1. (196 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (709 aa)
RFWD3Ring finger and WD repeat domain 3. (764 aa)
MCM3DNA helicase; Belongs to the MCM family. (810 aa)
TWNKTwinkle mtDNA helicase. (670 aa)
THOC1THO complex 1. (657 aa)
SRPK2SRSF protein kinase 2. (688 aa)
LRWD1Leucine rich repeats and WD repeat domain containing 1. (642 aa)
FANCMFA complementation group M. (1971 aa)
POLNDNA polymerase nu. (860 aa)
BLMBLM RecQ like helicase. (1405 aa)
KAT7Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (612 aa)
SIRT7Sirtuin 7. (401 aa)
Pola2DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (598 aa)
E4F1E4F transcription factor 1. (780 aa)
DDX50DExD-box helicase 50. (735 aa)
POLA1DNA polymerase. (1467 aa)
SUPT16HSPT16 homolog, facilitates chromatin remodeling subunit. (887 aa)
ALYREFAly/REF export factor. (256 aa)
RPA3Replication protein A3. (121 aa)
TOPBP1DNA topoisomerase II binding protein 1. (1392 aa)
PRIMPOLPrimase and DNA directed polymerase. (547 aa)
ENSCPOP00000027449Uncharacterized protein. (313 aa)
ZNF830Zinc finger protein 830. (363 aa)
EME2Essential meiotic structure-specific endonuclease subunit 2. (371 aa)
RRM2BRibonucleotide reductase regulatory TP53 inducible subunit M2B. (351 aa)
RTF2Replication termination factor 2. (308 aa)
FAM111AFamily with sequence similarity 111 member A. (597 aa)
MGME1Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA- primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair; Belongs to the MGME1 family. (356 aa)
RMI2RecQ mediated genome instability 2. (147 aa)
ENSCPOP00000030705CYCLIN domain-containing protein; Belongs to the cyclin family. (341 aa)
RNASEH2ARibonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (298 aa)
TOP1MTDNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (629 aa)
REPIN1Replication initiator 1. (612 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (380 aa)
ING5Inhibitor of growth protein. (213 aa)
TONSLTonsoku like, DNA repair protein. (1395 aa)
PclafPAF domain-containing protein. (112 aa)
WRNWRN RecQ like helicase. (1462 aa)
DDX23DEAD-box helicase 23. (819 aa)
SSBP1Single stranded DNA binding protein 1. (137 aa)
WDHD1WD repeat and HMG-box DNA binding protein 1. (1118 aa)
TRAIPTRAF interacting protein. (469 aa)
RPAINRPA interacting protein. (209 aa)
MCM4DNA helicase; Belongs to the MCM family. (863 aa)
ORC6Origin recognition complex subunit 6. (293 aa)
DDX11DEAD/H-box helicase 11. (878 aa)
PRIM2DNA primase subunit 2. (432 aa)
NFIBNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (494 aa)
Lig1DNA ligase. (909 aa)
RFC1Replication factor C subunit 1. (1153 aa)
POLE2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (527 aa)
ORC2Origin recognition complex subunit 2. (577 aa)
MCM6DNA helicase; Belongs to the MCM family. (821 aa)
CCNE1Cyclin E1; Belongs to the cyclin family. (410 aa)
DONSONDownstream neighbor of SON. (553 aa)
ORC1Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (837 aa)
BRCA2BRCA2 DNA repair associated. (3151 aa)
MCM9Minichromosome maintenance 9 homologous recombination repair factor; Belongs to the MCM family. (1117 aa)
POLLDNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. (594 aa)
SIN3ASIN3 transcription regulator family member A. (1274 aa)
TTC38Tetratricopeptide repeat domain 38. (468 aa)
ATRATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2539 aa)
Pold3Uncharacterized protein. (466 aa)
POLGDNA polymerase gamma, catalytic subunit. (1206 aa)
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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