STRINGSTRING
SNU13 SNU13 FAM155B FAM155B NUDT16L1 NUDT16L1 LOC100718706 LOC100718706 NUFIP1 NUFIP1 TBL3 TBL3 HEATR1 HEATR1 DKC1 DKC1 FAM155A FAM155A RRP9 RRP9 PRKDC PRKDC UTP6 UTP6 NUDT1 NUDT1 TSR1 TSR1 NOP56 NOP56 DDX21 DDX21 DHX37 DHX37 LOC100718426 LOC100718426 IMP4 IMP4 IMP3 IMP3 NOP58 NOP58 ISG20 ISG20 NUDT7 NUDT7 NOP10 NOP10 WDR3 WDR3 XRCC5 XRCC5 GAR1 GAR1 NOLC1 NOLC1 BYSL BYSL UTP25 UTP25 BMS1 BMS1 NUDT5 NUDT5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNU13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
FAM155BFamily with sequence similarity 155 member B. (418 aa)
NUDT16L1Nudix hydrolase 16 like 1. (211 aa)
LOC100718706Nudix hydrolase domain-containing protein. (194 aa)
NUFIP1Nuclear FMR1 interacting protein 1. (491 aa)
TBL3Transducin beta like 3. (800 aa)
HEATR1HEAT repeat containing 1. (2142 aa)
DKC1Dyskerin pseudouridine synthase 1. (513 aa)
FAM155AFamily with sequence similarity 155 member A. (277 aa)
RRP9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (472 aa)
PRKDCProtein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (4043 aa)
UTP6UTP6 small subunit processome component. (596 aa)
NUDT1Nudix hydrolase 1; Belongs to the Nudix hydrolase family. (156 aa)
TSR1TSR1 ribosome maturation factor. (752 aa)
NOP56NOP56 ribonucleoprotein. (592 aa)
DDX21DExD-box helicase 21. (797 aa)
DHX37DEAH-box helicase 37. (1161 aa)
LOC100718426Uncharacterized protein. (152 aa)
IMP4IMP U3 small nucleolar ribonucleoprotein 4. (210 aa)
IMP3IMP U3 small nucleolar ribonucleoprotein 3. (184 aa)
NOP58NOP58 ribonucleoprotein. (512 aa)
ISG20Interferon stimulated exonuclease gene 20. (190 aa)
NUDT7Nudix hydrolase 7. (256 aa)
NOP10NOP10 ribonucleoprotein. (64 aa)
WDR3WD repeat domain 3. (943 aa)
XRCC5X-ray repair cross complementing 5. (739 aa)
GAR1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (222 aa)
NOLC1Nucleolar and coiled-body phosphoprotein 1. (732 aa)
BYSLBystin like. (436 aa)
UTP25UTP25 small subunit processor component. (690 aa)
BMS1BMS1 ribosome biogenesis factor. (1277 aa)
NUDT5Nudix hydrolase 5; Belongs to the Nudix hydrolase family. (219 aa)
Your Current Organism:
Cavia porcellus
NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig
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