9 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression. (358 aa)
	LOC100732436	Uncharacterized protein. (327 aa)
	PDE4D	Phosphodiesterase. (782 aa)
	LOC100732158	Uncharacterized protein. (246 aa)
	DLG4	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family. (754 aa)
	H0VE70_CAVPO	Uncharacterized protein. (796 aa)
	GRIA1	Glutamate ionotropic receptor AMPA type subunit 1. (861 aa)
	PRKAR2A	Protein kinase cAMP-dependent type II regulatory subunit alpha. (395 aa)
	NEDD4	E3 ubiquitin-protein ligase. (896 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG4	GRIA1	ENSCPOP00000020709	ENSCPOP00000003440	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor AMPA type subunit 1.	0.946
DLG4	NEDD4	ENSCPOP00000020709	ENSCPOP00000000608	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	E3 ubiquitin-protein ligase.	0.587
DLG4	SLC9A3R1	ENSCPOP00000020709	ENSCPOP00000026208	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	0.597
GRIA1	DLG4	ENSCPOP00000003440	ENSCPOP00000020709	Glutamate ionotropic receptor AMPA type subunit 1.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.946
H0VE70_CAVPO	LOC100732158	ENSCPOP00000008303	ENSCPOP00000021644	Uncharacterized protein.	Uncharacterized protein.	0.721
H0VE70_CAVPO	LOC100732436	ENSCPOP00000008303	ENSCPOP00000031430	Uncharacterized protein.	Uncharacterized protein.	0.598
LOC100732158	H0VE70_CAVPO	ENSCPOP00000021644	ENSCPOP00000008303	Uncharacterized protein.	Uncharacterized protein.	0.721
LOC100732158	LOC100732436	ENSCPOP00000021644	ENSCPOP00000031430	Uncharacterized protein.	Uncharacterized protein.	0.721
LOC100732436	H0VE70_CAVPO	ENSCPOP00000031430	ENSCPOP00000008303	Uncharacterized protein.	Uncharacterized protein.	0.598
LOC100732436	LOC100732158	ENSCPOP00000031430	ENSCPOP00000021644	Uncharacterized protein.	Uncharacterized protein.	0.721
NEDD4	DLG4	ENSCPOP00000000608	ENSCPOP00000020709	E3 ubiquitin-protein ligase.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.587
SLC9A3R1	DLG4	ENSCPOP00000026208	ENSCPOP00000020709	Na(+)/H(+) exchange regulatory cofactor NHE-RF; Scaffold protein that connects plasma membrane proteins with members of the ezrin/moesin/radixin family and thereby helps to link them to the actin cytoskeleton and to regulate their surface expression.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.597