6 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Trim28	Uncharacterized protein. (829 aa)
	ATRX	ATRX chromatin remodeler. (2481 aa)
	NIPBL	Nipped-B protein. (2721 aa)
	CHAF1A	Chromatin assembly factor 1 subunit A. (949 aa)
	Lbr	Tudor domain-containing protein. (133 aa)
	H0V4A5_CAVPO	Uncharacterized protein. (830 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATRX	H0V4A5_CAVPO	ENSCPOP00000007087	ENSCPOP00000004442	ATRX chromatin remodeler.	Uncharacterized protein.	0.421
ATRX	NIPBL	ENSCPOP00000007087	ENSCPOP00000007347	ATRX chromatin remodeler.	Nipped-B protein.	0.692
ATRX	Trim28	ENSCPOP00000007087	ENSCPOP00000005181	ATRX chromatin remodeler.	Uncharacterized protein.	0.421
CHAF1A	Trim28	ENSCPOP00000010465	ENSCPOP00000005181	Chromatin assembly factor 1 subunit A.	Uncharacterized protein.	0.414
H0V4A5_CAVPO	ATRX	ENSCPOP00000004442	ENSCPOP00000007087	Uncharacterized protein.	ATRX chromatin remodeler.	0.421
NIPBL	ATRX	ENSCPOP00000007347	ENSCPOP00000007087	Nipped-B protein.	ATRX chromatin remodeler.	0.692
Trim28	ATRX	ENSCPOP00000005181	ENSCPOP00000007087	Uncharacterized protein.	ATRX chromatin remodeler.	0.421
Trim28	CHAF1A	ENSCPOP00000005181	ENSCPOP00000010465	Uncharacterized protein.	Chromatin assembly factor 1 subunit A.	0.414