5 items (Cavia porcellus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H0WAF5_CAVPO	Iso_dh domain-containing protein. (332 aa)
	IDH3G	Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (393 aa)
	LOC100725076	Iso_dh domain-containing protein. (377 aa)
	IDH3B	Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (383 aa)
	IDH3A	Isocitrate dehydrogenase [NAD] subunit, mitochondrial. (379 aa)

Your Current Organism:

Cavia porcellus

NCBI taxonomy Id: 10141
Other names: C. porcellus, Cavia aperea porcellus, Cavia cobaya, domestic guinea pig, guinea pig

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H0WAF5_CAVPO	IDH3A	ENSCPOP00000019967	ENSCPOP00000001412	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.995
H0WAF5_CAVPO	IDH3B	ENSCPOP00000019967	ENSCPOP00000013805	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.977
IDH3A	H0WAF5_CAVPO	ENSCPOP00000001412	ENSCPOP00000019967	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Iso_dh domain-containing protein.	0.995
IDH3A	IDH3B	ENSCPOP00000001412	ENSCPOP00000013805	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
IDH3A	IDH3G	ENSCPOP00000001412	ENSCPOP00000022214	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
IDH3A	LOC100725076	ENSCPOP00000001412	ENSCPOP00000020732	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Iso_dh domain-containing protein.	0.995
IDH3B	H0WAF5_CAVPO	ENSCPOP00000013805	ENSCPOP00000019967	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Iso_dh domain-containing protein.	0.977
IDH3B	IDH3A	ENSCPOP00000013805	ENSCPOP00000001412	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
IDH3B	IDH3G	ENSCPOP00000013805	ENSCPOP00000022214	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.996
IDH3B	LOC100725076	ENSCPOP00000013805	ENSCPOP00000020732	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Iso_dh domain-containing protein.	0.977
IDH3G	IDH3A	ENSCPOP00000022214	ENSCPOP00000001412	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
IDH3G	IDH3B	ENSCPOP00000022214	ENSCPOP00000013805	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.996
LOC100725076	IDH3A	ENSCPOP00000020732	ENSCPOP00000001412	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.995
LOC100725076	IDH3B	ENSCPOP00000020732	ENSCPOP00000013805	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.977